Gene detail

Detailed information of Csp0G409490 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00762:247840...255899
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G409490

ATGTATGAGGACGAAGAGGAGCAAGACGAAGGGCCGAAGAGCTCGTTCACAACATATTTAGCCGAAGGAGATGTTTTGTTTAAACAAGGGGAATATAAAAAAGCCTTGGAGAGCTACAATTTGGCATTGGAGTTAAAACCAACTGAAAAATTTGCTCTTGTTGCGAGGTCTCGTTGTCACCTTCAAATTGGTGATACGGAAGCTGCCTTAAAAGATGCAGAAACAGCTCTAGAACATGATAAAGAGTTTATTCGAGCACTCTATCAAAAAGCCGAGGCTCTGTATTGTATGGGTGACTTTGAACATGCTTTAGTTTTCTATCACAGAGGAAATAAACTAAGACCTGAGCAACAAGAGTTTAGACTGGGTATCCAGAAAGCTCAGGAAGCTATTGATAATTCAATTGGACGTGCTGCAAAAATTAAACTTGAAAATAAAGGTGATCTATCATTCTTTGCAAAACAGGATGAAGTGAAAAAGCCCAAAGGTTATGTCAAGCCAAAACCAGGTCTAAATAGAAATCAACAACAACAAGCCAATAGAGGAAAGAATGCCAAACCTCCAGCAGCTTCCACCAAAACTGTTAAACAGCTTTTAGGAGAACTTTATGCAGATAAAGAATATCTTGAGAATCTTTTGCAAGATAGAGATTTTATTCAAGGCAACAACGACAGCGTTATACATGGTCTTATCTCAGGTGGAATTAACTACCTTGACTCACGGACTGAATTCTGGCGCCAACAAAAACCACTTTATGCTCGAAAAAAAGAAAAACCCACGTCGCGCAGACCAAAACCGAAACCCAAAGATTCAGATCCGGCGGATTTCATTGTTCATTCACTTGAGGAAATTGATAAGAAACTAGCAGAAGGTGACGAACAAGGGAGTTTGAAACAAGCTGAGAATACTTTACGTAGTGTGAAGGCAATGAATGAGAAAGCAATCCCAAACAAGCAAGAAGTGATCGCTAATCTACACTCGTGTATTGGTAACGCTCATTTTGAAATGGATGATGCAATGAAAGCGCTGGAGAGCCATAAACGCGACTTGAATATTTGCAAGAAAATTGAAAACAAAGATGGCATATCTCGTGCATTAGATAACATTGGTCGGTGCCATGCAAGACTAGGCAGGTACGCTGAAGCAATTGACAGCTGGATGGAGAAATTACCGTACAGTAAAACACCATTAGAGACCACGTGGTTACATCACGAGATAGGCCGATGTTATCTAGAGGAGAAAAGCTTTCAGGACGCACTTGAGTGTGGACAGAAATCTCTAGCGTCCGCACAACAAGCTAAGGAACAAGTCTGGGAACTCAATGCAACCGTTCTGATTGCGCAGGCGCAAGTAAAACTAGGTGATCTTCCAGCAGCTCTGGACTCGTTTCAAAGTGCCCACGAACTGGCAATATTACTGGAAGATAATGCCGCTAAAACGGCCGTTGCTAAGGCAATTGACGATGTGAATAACAGGACCACCAAAGAAGTAAAAGAAGAAAGCGAGAAGCATTCTGGAAATGAGGAAACAGAAGAACAAAAAGAAGATGAAGAAAGAAGAAACGAAGATGATGACGATGATGATGACAGAAGAAGAGAAGGAGAAGAGGTGGAAAATGGGGATAAGGAGGTTGAAAATGGGGATAAGGAGGGAACAAATGGGGATAAGGAGGGAACAAATGGGGATAAGGAGGTGGAAAATGAGGATAAGAAGGTAGCAAATAAGGATAATGAGGTGCAAAACGAGGATAAGGATGGTACTGAGGATGTTCCACGTCAACCAGATGATGTTAGTGAAGATCTCGTGAAAAATAACGAGGAAAGTCACGTGGAAAATCACGAAGACAATGCGGTGAGGCCTGCTGGGAAGACCAACGAAGAGCTGGAAACACGAGACTAGTAAAGGTCTCAGGTTTCGTAGAATTCTTAGCAATTAAGATTTTTTCGGGAAAGCTTGGCACATAAGTAGTATTTTAACCAGGGAAACTCATTATTTTATGTTTTCTCGTGTTGATGTGAATGTATCTACGCCAGCTGTTTAGTATAAGCTCGTGAAATTTGAAATATGATAAGGAAATTCTTGTACAGGTTAAATTGATTAAAGTTCAAAGAAAGAGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR040111 all species →	Family	Outer dynein arm-docking complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23040 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24254	ODAD4, TTC25; outer dynein arm-docking complex subunit 4	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.