Gene detail

Detailed information of Csp0G410130 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00762:1015500...1024660
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G410130

ATGGAAATAGGAAACGAAATCAGTCAGAAAATCAAGACTGCAATCAAGAGCAAACTGGTGGAATTTGGTTCCTATGTAGATGATGAACTCCCAGACTATATCATGGTGATGGTTGCAAATAAAAGAAGCCAATCACAAATGATTGACGATTTACAGCTATTTCTTGGGGATAACAGTAACATGTTTTGTGATTGGCTTCACGACTTGCTGTACAAGTTACAAGAGGTCACTGAAGGAGCATTTGAACTCAAAGTACCCATTACAATAAATCCAGATGATGTTAAAAATGAAATCAAGACAAACGATACACTGGGCACAGATCCCTTGAAAATATCCAAGATATGTAAAAATCCTAGTCCAATTAGGATGCCTAACACAAGTAACATGAATCACGGAGAATCCTTTGAGAATCAAAATGAAGGTATTTCAAAGTCATCAGACTCGATAAAAATGAGCACTGAGAAAAATGAAGAAACATCTGACAAAGGAGAGCTGATGGAAAATACTGGAATGCTCCAAAGTGTAGTGACTATTCAAAAAAGACCAATTCTTCCACCTTCCAAACAAGCCAACCCTATGTTATTGAAGAAAGCCATGAAAGCAGCAACCCAGATGTCAGATGTTCACCACGGTGAATACAATCCTGAATTACCTGCCTCAATTAACGTGCAAAACATCTTGAACAAAAATCCCGAGAGCAAAAGGCGACAACGAGAACTTCTTCTGGAGGAACACAAAAAACTTCAGAGAATGAAGTCGCAACAGGAGGAAGATGATGAAGAATGCAGGGAGCCCATGATTGAACTATTGGTTGAACAGGACGACGATCTCTTTGCTACAGAAGAAAATTTAGTAAAGGACAAAAGGATTGTTGTTGATAAAAATGCTGAACTTGAGACGTCAGCTGAGTTGGAAGTTACGAAAAAGGACAAGTCAAAAAGTCAGGGTAAAAAAGAAAAGAAACTTGAGAAAAGAAAATTGGATGAAGATGCATCGAATGATGCTTGTGATGAATCTAACCAATCAGGTTCAAACAGTGAAGAAGATGGAAAGCCAAACAAGAAACAAAGAAGTGTAAGAACTAAAGAGAAAAAGCGGAAACCAAAGTTCATTGTGACTTTGGAAGGAGTTGGTCATGAGTTTGAGGAAAAATATGAAAAGGAACAATCGAGAAAGAAGAAAAGACGCAAGTCAATTCATAAGGAGGAGGAAAGACTACCAATTCTAAATGAAAATGTTCCAGTGATTCCTATTTACCCCCCATTGATTCATGGTGTTCATCAAGTACCTGGTGTCCAGCCAAATCCAATCCAACCACTTATCCAAGTTATACCAAGAACTACAATAGCTCAGTTACCAGTTAATATAGCCATGCATGCTGCGACTGAAGATTTGGAAAATGAAGATGAAGAGATGCCATTGTTAAGCAATGAGAAATGCTGCTTCTGGCCGCAGTGTAAGAACGGGGAGGATTGTCCGTATTACCATCCAGATGTCAATTGCAAACATTTCCCAAACTGTCGTTATGGTAACGATTGTGGTTACCTTCATCCACCATGTAAATTTGGTTCAATGTGTACCTTGTCATCATGTTCTTATTCACATCTACCAACGCCATCTCCTGCTGTTTCCACAGAAATTTCTACATTGTGTCGATATCATCCATTCTGTACAAAAGAAAATTGTCCATTTTTACATCGAACAGAAAAGCCTTGTCGTTATGGGACTAAGTGTACGCGTGCTGGTTGTGTATTCAGTCATTCAACACCACCTCCTCCAAGAGAACAACTAAAATGGGTTGCAGCCAAAGCACATGTTAGTGATCGACAATTTGCAGTGACGGAAGCAAGCACTACTCCTCTTTCTGTACAATGAAGGACGCAGCGACTTGGAATAGTAGTTTTAAGACTTTGTGCACATGTGGAGATGTATATTTTCATCTTAAGCTAAAATCCACCTTGCTACAAAACATTATATTTAATGTATTTTATAAGATAAGAAATTATTAAATGTTAAGGCCAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005953 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14608 all species →	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan
PF01480 all species →	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR040366 all species →	Family	Nuclear polyadenylated RNA-binding protein Nab2/ZC3H14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14738 all species →	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008143 all species →	Molecular Function	poly(A) binding	Interproscan
GO:0043488 all species →	Biological Process	regulation of mRNA stability	Interproscan
GO:1900364 all species →	Biological Process	obsolete negative regulation of mRNA polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23038	ZC3H14; zinc finger CCCH domain-containing protein 14	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.