Gene detail

Detailed information of Csp0G410340 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00762:1379514...1392696
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005626 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00086 all species →	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF10591 all species →	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR000716 all species →	Domain	Thyroglobulin type-1	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR019577 all species →	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036857 all species →	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR051950 all species →	Family	Developmental regulator and protease inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12352 all species →	SECRETED MODULAR CALCIUM-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24354	SMOC; SPARC-related modular calcium-binding protein	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.