Gene detail

Detailed information of Csp0G413340 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00768:1981573...1989929
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G413340

ATGTCGAACTTCTTCTCCTCGAGTTCGTACCGTCGGTTGGAGCAAGGAAAGTGTGACATTTTGGAAACGGGTGAGAATTCCGACGAACAAAACGAGGAAACAGGCCAATTGGGGGACGATGTTAACATGGAAGCTTCCTTGGACTTCAGACAACCAAAAACGAGCGTTATTAACAGTATAACCGGCGGCTGTTTTGTAGTGAAGAAGAAGTTAAGTAGCGCTTCACGGACTGTTATTAAATTTACCTTCGGTCGATGGCCGGTAGCTTTGACTGTTTTAATTAGCTATATCCTTTTAACTGTTGTCTGTATCGTGATCGCTTTGACAGGCCGATACCACGAGTTTAAAAACGACATATCGTTGAACTCCTTCATGGTCCCCGATATCAAAGTTTCGCGAGAATTCTCCAGTTTTAGCGTCGCTAAAGATCAGGGCAAGGGTTCTATGTTTGTTGGGAGGCATTTCCTGAAAGGGAACGCTTGTCCGAAGAATAACATTAACTACAGGGGACTGCCAATCCGAAGAGGCAAAAGGGACGTGCCGAATGTTCAGTACAGAAGTATGCACATCGCTTGGACGCTTGATTTAGTTTATATGGCGAAAGGTGTGAATGATTCAAATATTTTCACCGGCGAGCGACTTCAAGCAATTCACGCCATTGAAAATAAACTAATGGACCACGCTGACTACGAAAAACATTGCTATGTTTCTGCCCATTTCGCAGAAGATAAAGCCCTGAAACAATCTGGATATTGTACACCGCCGAATTCCCTTATTGATTTCTTCTTTCCTTCAACATCTGGCTACTACGACGGGAAAGGCGAGGCACTTCAAAACATTGATGACACCTTGACGTTCCTTCAAAGTCGAAAATACTTTTATGCCTTTGTTTCTGATGGTTACAACGTCAAAGACAAGCACAGCCGCTTTCTGAGAGCACAGTTGTTGTTTGGGTCACCTGTAAGAGGCATTTCCCCGGATAAAAAAGCCCAGAAAGCTGAGTTCAAGCGGTTTCTTCGCACCTACATTGAGCCTTTGGAAAAAATCAACAATGACAAAGTCACTGTCCTGTATGGTGGAGGTGATCTATTTGATTACCTAGTTGAAAAAGCTTTATATTCAGACCTACATTTGGCAGCAGTTAGCCTTGGACTCATTGTACTCTTACTCCTTATTCTGACGTTTTCACTATGGCTCTCGTTCATGGCCATCCTGACCATCGTTGCAAGCATCGCTATGGCATACTTCTTCTACCATGTTGTCTTTCATATTGAGTACATGGGTATCCTCAATGGCATCTCCTTGTTTGTTATCATTGGTATTGGTGTGGACGACATCTTTGTCTTCATAAACACTTTCCGTCAAGCAGTTGATAACCAGGACCTCGGTAATCGTATTTATCACACCATCTCAGTTGCTGGGAAAGCAACCTTGTTTACCTCATTCACCACTGCAGCAGCATTTGCCGCAAATGTTTTGTCCCCGCCTGCGGGCAGGGTGGAAAATGGAGAGGTGACTGATATAGTGTCTTCATCAACAGATGATATTCGACAGTTCCTATCTGGCAACCCATCTGGTGTGACCTACGAGCATCTCCCGAACGATGGCCAAAATTCCGACCGTCTGGAATTACGCACTCTCATCAACGACAACAACGACGACGACGATGATCCCTTGCTGATCCTCGATTACGAATCCCCTCCTCCTGTCCCTGAGCATCCCACAGATTACTTGGGCTTCCGTTTGCAAAGCATTCTTTACCATTTCGTCGCCAAACCGGTAATAAAAGCAAGATGGGTCATCCTCCTTATCTACCTTGCCCTCTTCGCTGGATCCATTTATTTCGTGACCAGAATCCAGGTGTCCAAACAACAACCCAAGATATTCAAAGCGACGAGCAACCTGCAACAGTGGTTGGAACTCCCCCAAGTCGCCTTGCATCCATCGCTGTCCATGGCGGACGACTTGTTGCGGATTAGCAAGCACATACCCAACAAGCCCGCCACCACTACTCGTGCGCGGCGTCCTGTAGAAAGAGGAACTACAAAGTTGCCAACGACACCGCGTACAACGCGACCTCACACCACTTCGATGAGGACAACATTTCAACAAACTATGCTAACTACAAGGTATGCTAACTACAAGATGAAAGTCGCAAGATAA

Transcript

Csp0G413340

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007833 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12349 all species →	Sterol-sensing	Sterol-sensing domain of SREBP cleavage-activation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR042480 all species →	Family	Protein dispatched homolog 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46687 all species →	PROTEIN DISPATCHED HOMOLOG 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01530	E7.6.2.1; phospholipid-translocating ATPase	EC:7.6.2.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.