Gene detail

Detailed information of Csp0G415280 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00769:1114858...1124051
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G415280

ATGGATAGTGAGGATTCATCGTTATCAGAGGTTGAAGCACCCTTCTATGTTAAGGGCGAGGAAGGTAAAATAGACGACGTGGATAACGTTGTTGAAACACCAACCAAGGACGACCCAGATTCAGCCACTAGCAGTGAAGCCGAGGCTACAACAAATGACGACCCTGTGGCCAGTGATGATGAATCAAAAGAAGTAGCTAGTGTGTTGATATTAACAACAAGCAATTTCGATGATTTCATCAAGGAACATGATACAATATTAGTTGAATTTTTTGCGCCCTGGCATGTCCGATCGTGTGGTCATTGTAAGAGTCTTGCTCCAATCTATGAAAAAGCAGCTAAAGTTCTAAAAACACACACTCCACCTGTTATATTGGCTTCTGTTGATGCAACAGTAGAGACCGATTTAGCTTCTAGATTTGATGTATCTGGTTATCCTTCCTTGAAATTTTTTAAGAAAGGAGATGTTCATGATTATGATGGACCAAGAGATGAAGAAGGCAAGACTAACACTAGTATTGTTGAATACATGAAAGAAAGAGCTGTTCCTGACTGGAAACCACCTCCTGAAGCAGTAATAACACTTACCAAAGACAACTTTGATGAAATTTGCACTAAGTGTGGCCATTGCAAAAAACTTGCCCCTGAATATGAAAAGGCTGCAAAGTCTTTAAAGAACCATTATCCACCTATTCCTTTAGCCAAAGTTGATGCGACTGTTGAATCAGAATTAGGTTCAAGATACGAAGTGTCTGGATATCCAACACTAAAAATTTTTAGAAATGGCAAAGCCACAGAGTATAAAGGAGGCAGAGATGAATATGGAATAACTGATTTCATGAAGCGGCAAGTTGGTTCCAGTTCAAAACTTTTAAAAACTGAGAAAGCTGTCATGGACTTTGTTAAAGAATGGGAAGACATTGTCATTATAGGATTCTTTCAGGATGAAAATGATCACCTTCTAACTACATATCTCGAAGCCAACAATGATATCAGAGATGATTTTAGGTTTGGACATACTTTTCATTCAGAATCAAGAAAGGCATTTGGATTTCAAGAGAATACAATTGCTCTTATTCACCCAGAAAAATACAGATCCAAATATGAGGAGAAATATGTAACGTTCAAAGGAGATTCACCCAAACCAGAAGATCTTCAGAACTTCTACCAAGATCATTTAGTCCCACTGGTTGGTCAGATGACTCGACAAAATGAAGAAAAACGTTACAAGAATCGTCCATTAGTTATAGTTTATTATGGTATCGACTTTAGTTTTGCACACAAAGAAGGTACACAGTACTGGAGAAACAAGGTTCTTGAAGTTGCCAATGAACATCGTGATTTTACTTTTGCAATTGCTGATGAGGAAGAATATCAGGATCGCTTAAAAGATTTTGGGTTGGATGACTCTGGCGAGGATGTGAACGTTGCATTATTGGATGAGAAGGAAAGACGTTATCGAATGGAAGATGAGTTTAATGAGGATACTATACTGGAATTTTTGGAAGCTTACAAAAATGGTGAACTTAAACCTCAAATTAAATCGCAACCTATACCGAAAGCAAACCAAGGCCCAGTTCAAGTAGTCGTTGGTAAAACATTTAAAGACATAGTGCTTGACGACTCTAAAGATGTCCTAATAGAACTGTATGCCCCTTGGTGTGGTCACTGCAAGTCATTAAAACCAATATACAAGAAGCTTGCTCAGCGATACAAGGACGAATCAAACGTCGTGATTGCTAAATTAGATGCCACTGCCAATGATGTGCCTGTCGAATACAAACCCGAAGGCTTCCCCACAATTTTCTTTGCACCAGCAGGAAGTAAAATGAAGCCCGTGAAATACGAAGGAGCGCGAGAGTTGGACGACTTTGTTAAGTTTTTACAAGAGAAATCAACTGTATTGTCTTCTAAAGACAAAGGAAAAGAGGAACTTTAGTGTTTAGTTATTATGTAATTTAATTAGTAGTATTTTAAACGTTTGTCTACCTTAATGTCTACCAGCATATTGTATATGTGGCTATTGAGGGGGAAATTAAAGGTTATCAATGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan
PF13848 all species →	Thioredoxin_6	Thioredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005788 all species →	Domain	Protein disulfide-isomerase, thioredoxin-like domain	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR005792 all species →	Family	Protein disulphide isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18929 all species →	PROTEIN DISULFIDE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003756 all species →	Molecular Function	protein disulfide isomerase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0034976 all species →	Biological Process	response to endoplasmic reticulum stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09582	PDIA4, ERP72; protein disulfide-isomerase A4	EC:5.3.4.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.