Genomic Location: Contig00795:2432498...2450220
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families
| CDS |
| Csp0G434010 |
| Transcript |
| Csp0G434010 |
| Protein |
| Csp0G434010 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11835 all species → | RRM_8 | RRM-like domain | Domain | Interproscan |
| PF13893 all species → | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | Domain | Interproscan |
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006536 all species → | Family | HnRNP-L/PTB | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR021790 all species → | Domain | PTBP1-like, RNA recognition motif 2 | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15592 all species → | MATRIN 3/NUCLEAR PROTEIN 220-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006397 all species → | Biological Process | mRNA processing | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0043484 all species → | Biological Process | regulation of RNA splicing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13218 | PTBP1, PTB; polypyrimidine tract-binding protein 1 | - | Spliceosome | ko03041 | deepkoala |
