Gene detail

Detailed information of Csp0G444630 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00801:951735...958202
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G444630

ATGTTTATAAACCAATCTTCATTCACCATTTGCTGGTCCACATGTGTCGAATGCACTTACATATATAGTAAAGTACTGAAGCCGTCGATTAAGGACGATACAAATAAGAAACATACAGCGATTGCATTTAAAGAAACACTTTGGCCAGAAGCAGTAAGAAGAACTACCAATTCGCGGCCATGGATAGTATTAGATTATCCCGATGATATCGCCGTATGTCTGCACAATCTTCCAGTTATACCTAAAGAGCCCATGCCTCCTAACAGTACTTTTAATGCTACTGAAGAACGCCAGGTTCTTTTGGATATTTTCTCGAGTACTGCTGGGCCTTTTTGGTCCAATAATTATGGTTGGAACGAGACAACCATTCATTGCCGATGGTATGGTATCCTATGTAACATGACTAGTGGACGGGTCATAGCTTTGTCACTCGCCTCCAACAACCTCACTGGAACCTTACCTTCAACCATTTGGAAATTGAGAGATCTTCAAGCAATTTGTTTCGAAGGAAATATTGGAATTCGCGGAAAGTTGGCAGATTTTCTTACGTCCAACATGACCAGATTGATGAGACTAGACCTAGCTAGAGCTAGTCTTAAAGGTGAAATTCCCACCGAAATTATTCAAGGGTTAAAGTCCTTGATAAAAATGCAGTTGGCTGGTAACAAGCTTCGTGGAGTTATTCCGTCTTCCATAGGTCAATTATCTGAGCTTCAAGTGCTGAGTCTTGGAGAAAACTTAATAAAGGGTATAGTTCCTGATAGCATTCAAAAACTTTCAAAACTGTGGTTCCTTGACCTGGAATCCTTATCACGTCTCAAAGGAACCATCAAACCATTTCTTAATCTTTCGTCTTTACGATTTATGCATTTATCTGCCAGTGGATTACACGGAACATTACCGGATGACTTCGGGTTGATTTTTCCTGGATTACTAGAATGCTTGCTGGGCGAAAACTCTCTGCGCGGACGTATCCCGTCGACCATTGGTAACATTACCGGTCTTCTTCATTTAAACCTTGGCAAAAACAAGTTTGGTGGGAATATTCCTAAAAGCCTAGGTCAACTTAGACATCTCGAGGTCTTGGATCTTTCATTTAATTCGCTGACCGGATTCGAAGAGTCATTCATATTTAATTGCACTAGCCTTGCTCTCTTAACTGTCGCCAGCAATAATATTGGTTCAATGATGCAGTTTCCAGGTTTTCTCGACAAACTGCAATCGGTAATGCTTTCTCTCAGAAGTCTGAACGCAAGTGGCTGTAATTTTTCGGGAAATATTCCAAACACAATATGGTCTTTTACCAATTTGATATTCGCAGACGTTCAAAATAATTCACTGACAGGAACTTTACCATTACCATCGGACAATATGTTATTTTTATCGACACTAGACTTTTCAGGAAACGACCTAACTGGACATATACCCGGAGCATATGCCAAGCTATTGGGTCTACAAATTTTTGATGTGTCCTCCAATCCACGCCTAAGGGATGCCTTTGGGGGTATCCCAAGATTTGCTCGTGCAGACACAAGTTATTTCTTAAGAGAAAACAAAAATGATCGGTTTACGTGCCCCATTATCAGGTTTAAGTACAACAACGGTATCATCAAGATGGATTCATCGTATTACGATAGAATTTACTGTGAATGCGACAAAGATTATTATGGATACAAAGGCCATTGCCTACAATGTATGACTGGGGGGTTGTGCATCCGACAAAATTCTTCGCAATTTTCATCGTACATGCAAATTGACCGTGGATACTGGCCATCACCTGAGGCATATAATGCAACCCATCTTGCATCGTGCCAAAAAACAAATCTTTCAAATTCTGTTTGCAGCCCCACCGGGAAGTGCAACTGTTGGGTGAACGTAACGAACGAAAGACATCCCTCCTTTACAGCATGTGATACTGATTGCATTTGCAGTAAGGGCAGCAGCAGTAGATTCTGTTCAAAATGCAAACGTAATTTTTATAGCCATGCGGGTCTTTGTTTTAAATGTCCAAATAGAAACTCAGATAAAGTTGGAATTCTTCTTCCTGTTATCGTTGTCGGAATTTTAACCATAGTTTTTGTTATCTGGCTGGTTTTCTTTAAGAAATATCGCAAAAGGTCTATTGTAGTGGTGATCATAGAGATTGTTTTTGTAAGCATTTTGCACATTTTTAATTTTGTTCCGTCATGGTTGCTGGAGATTAACATGATTATTTGGATTCTCGGTGTTGCCGGACATGGCCGCAAATCCAGAGGAGTTCTCAAGATCTTAATATTTTATATCCAACTTCTCGACGCGATGAGTTCAAACTTCAATATATGGCCTTATAGTGTCTTGAAAATACAGCGATACTTTAGTAATATTTTTAATTTCCATTTTGAAGGACTTGAATGTTATTTTCCAAAGTTGTCAACACCTGTTGGCAAACTTTTCTCTCTTCTTTTGTTGCCTATTTGTATGACTGCTGCAGCAGGTGTCGTATTCTTTTTCTATGCTCTGTTTTGCAAAATTCTCAAGGCCAGGCCAGAGAAAACTAAGGAAGCCAAGCACTTTACTTTGAATATCGTAATTGTGTTTTTTAATTTGGCTTATTTTCCGATCGTCAAGCGTTCGTTTTCGGCTCTATCTCCTTGCTTAGATGATTGGGGCTTTTGGTATATGCCTCAATATCCATGGATTGATTGTCCAAGTTCAGAATATAAAGCAATGCGTATTCTTGGCTACTGCTCTTTAGTAATATACATTGTAGGTGTCCCATTTGCTGTTTTTCTACCGCTCTTGACGTGGTTCCTAGTCTTCAGAAATGTTCAAAATGATGGTGACAGAGAAGACAGAGATTCATGGCTTGGGTCTTTGTATCTGGCGTATGACAATCAATATCGAAATTTCATTGAGATATTTTACTTAATTCGTAGGGCTTTGTTTGCTGCTTTCCTTGCTTTTATCTCAAGCCGATCTGATTTTCAGATTCCTCTCTTAGTAACGGCCATCCTGATTTCACTGCTGTTAAACATGGTTTATAAACCGTACGTTTGTCCGCGTCCATTGTATGGCATTGACGTAGAAAACACATTGGAAAGTTTTAATTTGTCCGTGCTCCTGTTGTCATTTGTTAGCCTTGGTCAGGTGACACTGGGTAGCGGTAAAGCGATTACATTGATATGGTTGGTTCTTGCTCTCAATTTCTTTACTATACTACTCTGTGTCGTCGTTGTTGTTATTAGGTTAGTCACAAAGGAAGAGTATGAAAATATCGATGACCATGCAGGTTAA

Transcript

Csp0G444630

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48052 all species →	UNNAMED PRODUCT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05684	ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.