Detailed information of Csp0G446850 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00809:227188...235082
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423
all species →		LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010920
all species →		Homologous_superfamilyLSM domain superfamilyInterproscan
IPR034105
all species →		DomainSm-like protein Lsm3Interproscan
IPR001163
all species →		DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR040002
all species →		FamilyU6 snRNA-associated Sm-like protein Lsm3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13110
all species →		U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0005688
all species →		Cellular ComponentU6 snRNPInterproscan
GO:0033962
all species →		Biological ProcessP-body assemblyInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013
all species →		Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:1990726
all species →		Cellular ComponentLsm1-7-Pat1 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Csp0G446850.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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