Gene detail

Detailed information of Csp0G449990 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00809:4878654...4886202
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G449990

ATGGCGTCCGAACTTGATGAAAAAGGGAAAAGCGTTTCTTTTACGTTTTCAAAGAAAAAAGCTATTTCGAAATTGGTCCGTACCAACCGAGAGTACGAGAACAATGACCGTGAACTTGCTGACGGAAAAGATTTCGTTCATTCTGCTGAAGGCAAGTCACTAAAGAGTGTAAACCCTAAAGAATCAGCCAAGGAACTTATCATACCATGTTTGCCTCGGAGTGATTCGTTATTTCAACATGGAAATCTCGGGGACAAAACGAACACTTTGCCCAATTTGGATAGACAAGCAGCCCAAGAAATTATAAACTTATCCAAAGCCCAAACATCTGATGATGAAACTGGTACAAATTTTGCCATACCAGCACTGGCAAAAACCCATTTAGTTGCAACAGAGGGAGCCACTACTAGTGTAACAGAAGCTGCAGCTACTACAGAGGAGAGTACTTTACAAGACTATGATGCTGTGCCAGTTACAGCATTTGGTGCAGCAATGCTCAGGGGAATGGGGTGGAAAAAAGGAGAAGCTATTGGAGGGACAAACAAAGGATTAGCAGTTCCAATAGAATTCATTCCACGACCCCAGGGACTTGGACTTGGAGCTGAACGTAAATATGAGGAAAATGTAAAGAAAAAAAGAAAGAAACCTGGTGATGTTGAATCAAGCAGAAATTCTGGTCCCATTGTTGAAAAAGATGGTAAAGTGAGACATTTTAAAAGTCTAGATGAAAAATACCCTGACAAGCAAACACAAGCAATGACCTTTTCGAAAGGTAGTTATGTTGTGGTAATGTCAGGACCTCATAAAGATCTCAGTGGTAAGATAACGGCAATGGATGAAGATAATGCAAGAGCATTTGTTTGTCTTGCCATCAACAGTGAAGAAGTGACATTGAGTCAACATAACTTGAGGATAGTGGACAAGGATGAGTACAAACAGTTTTCAAAAGGGGAGCCATCGCAACATGATAAAAAAGATCACAGAAAAACTAAAAGAAGGAGAGAAGAAGAGGAACATAGGCAACAGAAATCAAAACACAAAAAGGACAGCAACGATAAAACGTGTTCCAAGGGGAAGTCCAGGGATAAACATGAACATGACTCTACCAAGGTAGTTTCTAAAGATGAAGAGAAATTCCAGTCATGTTGGATGGCGCCTCTTATCCGAGTCAGAATAATCAGCAAAAGTTTTAAAAAAGGGAATTATTATCATAAAAAGGTTACAATTCAAGATGTTGTGAGCACGACTTTGTGTGTTTGTGAGACAGATGACGGTCGACTTCTCGAAGATGTTCCTCAAAGTGTTCTTGAAACAGTAATACCTAAAAACAATTCACCCTTTGTCCTGTTTGTTCAAGGAAAGTATAAAGGATTGATTGGCGAAATTGTGGAGACAGAATCATCGAAACATCAAGCTATAGTTCAAATTTTAAGGGACAAAAGCGTCGTCAAAACTCATTACGACGATATCTCAGAGTACATAGGTGATGTACATAGAGAATGAAGAAGTCACGAGAGCTGTTGAGGGATTGAGGTTGCAGGAAGAGGTTGGAAGGAAGACTGACACCACAGGAAGATCGTTCATTGAGCCTGAGTTTCAAGCATGCATTCTCCGTTGAATTTTTGGCGTAGTGCTGCCCTCCAAACTCCAATGCCGGAATTGTAAGATATTAAACGGAAAAATCAAATTGTATTTTAGTTTCCTTACTGTTGGCCATCTACTTGGGGAGTGCGCACCAAAAAGATGACCACTTATAAGGAGAACCATGATCCCTTGCGCGCTGGAAATGTCATATTTTGCAACATGCCAACATATGGAAATATATGGTCTAGATGGTTACTACACATGTCTGTGAGCTGGGAGACACAGGTTCAAATCCTGGGTCGGATCTCCACTCGGTGTCTTAAAAATAATTGAGGAGAAAGTGTTTCCTTTGCAATAATCTGATCAGCAAATGGTATACAGAACCCCTATCAATTGGGCTTCTAGCCTGTTGGGGTACTGCGTTCACCTAAGAGTGATAAATTTGTGCGTTAAATACGCTTTGACGCACCCGCGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12656 all species →	G-patch_2	G-patch domain	Domain	Interproscan
PF00467 all species →	KOW	KOW motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005824 all species →	Domain	KOW	Interproscan
IPR026822 all species →	Domain	Spp2/MOS2, G-patch domain	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR045166 all species →	Family	Pre-mRNA-splicing factor Spp2-like	Interproscan
IPR041993 all species →	Domain	G-patch domain and KOW motifs-containing protein, KOW 1	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15818 all species →	G PATCH AND KOW-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13101	GPKOW; G patch domain and KOW motifs-containing protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.