Gene detail

Detailed information of Csp0G456630 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00837:38708...40726
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G456630

GAGCATCTTACAAGTAAGGATAGCTGAAGAAAAAATAAGAAAAACTATGGCTCAACTCATGATCTCTGGCAGTAAGGCGAAGAGAGGAACCATTCAGATTTCTGGCGCAAAAAATGCCGCTCTGCCTTTGATGTCAGCCAGTCTGTTAACGAAGGAGAAAGTGAAGCTTCATAATATTCCTAACATTAAGGAAGTCGACAGCATGAAAAAGCAACTCGAATCGTTTGGAGTCAAAGTCAGTAGTGACGGCCCTGCATTAGTCTTAAATGCAGCGAATGCCAGTTTCGCACCGACGAACGACTACAATCCCACTCGAGGAGGTTTTACAATCTTGGGTCCACTCCTCGCGCGGTTTGGAGAGGCAAAGGTTCGTCTGCCCGCTGGTTGTCAGATTGGTAAATCTGGTCGTCCAGTAGACTACCATATAGCTGCTCTGAAGGAGATGGGTGCCGAAGAGGTTCCAAATAATCAGAACTGTATATGGTTGAAAGCTGAAGATGGCCTCGAGGGAAAAAATATCCATTTCAAAAACGTTTCTGTTGGTGCCACTGAAAACATCATCATGGCAGCATGCCTTGCAGACGGAGAGACAATAATTACAAATGCAGCCGTGGAACCTGAAGTCATTGACTTGGTTAACATGTTGAAGGAAATGGGAGCAAACATTGAAGTAGAAGCTCCAGGAAATAAGATCACCATTCAAGGACGAAATAAGATCGCCATTCATGAGAAACGCCTTTTGTCTGGTACCACACACACAGTGATACCAGATAGAATCGAAGCTGGTAGCTATGCCATAGCAGCCGCAATTTCTGGAGGACCACTCCTTTTGAAGATGGATCCAAGTGCAGAAGATATGCTTTCCATTGTTGTTGAAAAGTTGCAACAGGCAGGAGTGGAAGCTACTTGGAAGGAAAATGGGCTCCTGGTACAGATAAGTGGTGGGATTCGCCAAGTTGATATTACCACCGGTCCATACCCCGAGTTCCCGACAGATCTGTTACCACAATGGGTAACACTCATGACACTGGCCAATGGAACATCTCGGATAGAAGATACAGTCTATGACAAGCGCTTCCAGCATGTCGAAGATCTGGTGAAAATGGGCGCCTCCATCACCAAGAAATCTGACAGCGTTTACATCGTCATTGGTTTAGCAAAGCTGAAGGGAACGCATGTAAAAGCAAAGCTGCAGGGAAAGCATGTAACAGCCAAAGACCTGAGAGGTGGTTTTGCGCTCATCCTTGCTGGGATGGCTGCTGAAGGATGGACGGTAGTAAAGGATATTCATCACGTGGAACGAGGATATGAAAATATCAAGGAAAAGTTGGCGCAGTGTGGTGCGATATTCGAACGTCTACGTGAAACTCCCCGAGGATATTACGGACATCCCTCGCAGTGATACTATGATAATACTCACTTTAACTTTGTTGTTAATTAGAAACACGTAGTTTTACTAAATGTCGCTGTAATGCAAAACTTTTATTACTTTTGATAGCTTAGACTGTGCACATGCATGTATAACTAACTACGTAAAATATGCTAGTATAGTAATAGCAATACACTGAATGGGAATACTTTTCTTGTTTTTGAGATCATCTTTACTTTATGATCTATGTAAACGTATTATACATCCTATATTATATATGTTTTAGTGAGACGTCTTGTACCGTGGCCACCTAACAAAGTTTTCATTAAGTTAACCAATCAGCAAACAAGAACTTTTTTATGGCCAAGTGCCATTAATATATTCATGGAGCTATACAACCTAATCAGTTGTGGGCGTGTTTCTAGTAAAATACGGATTTGCTGATTGCCTATATCTTAATCAAAACATTGTTATGTGAATGGCCACGTTACAAGGAGTCTCACTGTAAACTATAGTTAATAACTTTTGAATCAGCACCTGTCAATTTAATTACAATAGCCAAAAAAATATTTTAAAAATAGCAATGACGAAATAGCACAAAAGAGGGGAAAAAAAAAGTAAAGATAAACTTTTGATAAGAAAGAACTCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00275 all species →	EPSP_synthase	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005750 all species →	Family	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Interproscan
IPR050068 all species →	Family	UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA subfamily	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR001986 all species →	Domain	Enolpyruvate transferase domain	Interproscan
IPR036968 all species →	Homologous_superfamily	Enolpyruvate transferase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43783 all species →	UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008760 all species →	Molecular Function	UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity	Interproscan
GO:0019277 all species →	Biological Process	UDP-N-acetylgalactosamine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00790	murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	EC:2.5.1.7	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.