Gene detail

Detailed information of Csp0G457780 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00838:267519...278785
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G457780

ATGCTTCAGATCGCAGATATGATGCACCAGAGAACATGGTCAATGTGTTTAGTTTGTGATGCCAAGTTTAGATTTGATTCTCCTCGAGAATTTGCAAAACACCTTCGTTCTAAACATTGTTCAAAAGAGGGAGGTTCGTTTGTTTGTCGTTATGGTAGGAATGGTGTTTGTCCTTCTCTTCCCGTGGAAGGAGTTAGTGATGCTGATTATGAAGCTCATGTTGAAAAGAATCATATTGGTTCATCCCTTAAGACTGAGAATGTTACTACAGGTGCAACAGGTAATTGTGAAGATAGATTGGTTGGCTGTATACGGATGCCTCCTATTACATTTAAGGAAGAAAATTGGACATTTTTCTCATCAACGCAAAACCTTGCTGCTGTTCTGAATAATCCAAGTGAAAGAAAGAGATCTAGTGACTTTTTTACCAAAACATGGGGAGCAGAGTTTGAACCTTGTGAAGTTCCTCCATTGACATTGCTTCAAGCTGTTCCAAAACATTATTTTAATGATTATATTAGGAAAATCCAATTTAGAGTAAAAGCACATGAGAAAGTGAAAAAGAGTCTTCGAATAAATGAAGGAGTTAGTGAGCTTGGTGACACAGGTTTTAGCCAAGCAGCTATATCTGCAGCCAAAAGACAAGGAGACAAGTATTTGAATGACCTCAGTGCAATTCCTAAGATTTTTATGGATGCGAATTTCACTCTAGAAGATCCTGAAACATTCAAATATGTCATACCATTAGCAAGAAATGATTCGGTTGATGGGAAATATCGAAACAAGAATGCCATAACACCTGTGCCAAAAACTTCTCTTAAATTGATGCAAGAGAAGCTAACTCATTTCTTGGACATCACAGAGGTCACGTTAGCTCACCAAATTTCTCTGAAATCAGAAGACTTTTTCCTAGCAGTGTCGTCACAGGACAAACTTCAAGATGATGTTGGTCAAACGAACTCCGAAATAAAACATTTACGAACAAAAATCAAGCAAGTAAAAGATGTCTTGTGTGGTGGTTCATTAAAGTTTATGCAGCTCATGCAGTTACGGTCAAGATATCATTCCGTGCATAACAAATTAAAATTAATGTCAGCTGTGCAACAAACCCAGCCTACCATTCAACTTTTATTATCCACTGGTGACTTTGTCGCAGCATTGGATTTAATTTCCACAACACAAGAGGTTCTTCAGCTTGAACTTGGTGGTGTTCAAAGCTTGAGACATCTAGGGTCACAGCTAGCTGAATTAGAGAGGGTTATTGAACGGATGATGGAAACAGATTTCATTGAATTTGCAACAACAAATCTTGCTAAACCTCTTGAAGACTATGATGATCAAGACCATCTCATTGATGAAGAACGTTTAGTTTCTGTATTATTTGGCTTATTGAGAAAACAGAAACTGCACTTTATCCATTCGTACAAGGAAGAAGCATTTGCCACAGTCAAGACTACAGTTAAAGAAGCAGCCCGAAACTTTGTGTCCCAAACTGCCATTAGTGAAGACAATCAAGGTCTCCGTGATGCAATGCATGGTCTCGATTTCCAAGGTTGGCTAGACATGCTGAAAGTTGTATTTGCCAACGTCTTACAAATATTAAAACGAATGAAGATTTTACATCAAAGTTTTATCAACGTCCTTGGGATTGCAGCTCATGGGAAAGACAACTCCATATCTAGTCCCCTAGATCAATCGTCTTTTGACAGCAATGATATTCTTATTTCTAATGTTCAATGTACAAAGTTGTCAAGTGAGAGTAAGGATATTCTTGGAGACGCTGGAGAGTTAGCTCAAGCTCGTTGTATTAAGCTGATTAATCTTAGAATTAAGGCTGGTTTTCTTGATGCTCTGGCCTCTGCAGAATTTGTCTCTCTTTCGAGATCTGTTGAAACATTTGTGAGTGACTGTGAAGAACTGTGTGGCCGACAGAGCCACGGGCTACGGACAGTGTTGGTGGCTCAGGCTAAGAAATTCGTTGAACGGTTTCACGAAGAAAAGAAACAAAAATTAAGTTTGATTTTGGATAACGAAAGATGGAAACAAGCTGATGTTCCTGGGGAGTTTCAAACTCTTGTAGATTCTTTGGTGGATGGTAAGTTGCCTTTTGCAAGTGCTTTCATGCATATTTTTTTTATAACCCCACCATCCCATCAAAAACCAGGCAGTCATCTTGTTGTAAATGGAGAGAAGTTTGCTGTTGCCGGGACCTTGTTACTCGTGCTAAAAATGATCGTGGAATATTGTCAATGTGTTGATCTCATGCCAATGTTGACCACGGATATTATGACAAAACTTTTTGAGCTGATGAAGCTGTTCAATTCTAGAACTTGTCAACTGGTGCTTGGCGCTGGTGCTCTCCAACTTGTTGGTCTGAAAACAATAACTGCCAAACATCTAGCTTTGGCTTCGCGTTGTTTGGAAATTGTTAGTTTACATATTGTAACTTTCAGAAATCATTTTGAACTTCGTCTTCCTCCTAAACAATACGTTCTATTATGTCAATTTGATCAAATTTTAAAGGATTATAACAACCATAGGCAAGAAATTTTTAGTAAAATGGTCACATTAATGGAAGAACTTTTTATTAGTCAATTATCAACGTGGGAGGTTCGTCCACCAATGCCATCTCAAGTCATGAGAAGTATTGTCAAACAAATTATTAAACTCCACGAAGCCTTGTTGGTCATATTACCTGCAAGTCAAGTAGAGATTGTTTTAAAGGATGTTAAAAAATCTTTCAAGCAAGTTCTGGCGAAGAAAATCACAGGTTTAGGAGTGAAGAACGACTTTGGACCTCAACATGGTTTGGTACAATCGGACTTGGCGTTTTTTTCAATGAACTTAAAGTCATTAAATGGAATGAAAGATGTTGAAGAAACTTTAAACGATATCTGGAAACTTGCTAATGAACTAAAAACAAACACTTCTTCACCTAAGATTAATTTACGTAAGAAATCTCTCCCTAACAGATAA

Transcript

Csp0G457780

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10475 all species →	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan
PF07928 all species →	Vps54	Vps54-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039745 all species →	Family	Vacuolar protein sorting-associated protein 54	Interproscan
IPR019515 all species →	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR012501 all species →	Domain	Vacuolar protein sorting-associated protein 54, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12965 all species →	VACUOLAR PROTEIN SORTING 54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17600	VPS54; vacuolar protein sorting-associated protein 54	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.