Gene detail

Detailed information of Csp0G458430 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00838:844714...855234
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G458430

ATGGCTGACGAAGAACAGAAGTATTATGGTTATTACTACGGAGATGATGAAGATAAAGGCTTGTTAAATCCAGCTTGGTCAAAACAACAGCAAAAGACATTTACAGCATGGTGCAATTCTCATCTCCGTAAAGTAGGCGTTCAAATTGAAAACATAACAGAGGATTTTCGAGATGGCTTAAAACTAATGCTTCTTCTTGAAGTCATCTCTGGGGATAGATTGCCAAAACCAGAGAAAGGCAAAATGAGGGTCCACAAAGTAAACAATGTCCAAAAAGTGTTGGATTTTGTCTGTTCCAAAGGACTAAAATTAGCATCGATTGGAGCTGAAGAGATCGTTGACGGCAATCATACGATGACTATGGGTATGATCTGGACAATCATTTTGCGCTTTGCAATTCAAGATATTGCAGTCGAAGAATTATCATCAAAAGATGGTCTGCTACTTTGGTGTCAGAAGAAGACAGCTCCATATAAAAATGTGAATGTTACTAATTTTCATCGGAGTTTTAAAGATGGGTTGGCATTTTGTGCATTAATACACAGACATCGTCCAGAGTTGCTGAATTATGCTGAACTGAGACAGGACAATCCTGTTCATAATCTAAATTTGGCATTTGAAGTTGCTGAAAAGCATTTGGATATTCCGAAAATGTTAGATGCTGAAGAAATGGCCAGCATGGAGAAGCCTGACGAACGTGCAGTCATGACGTATGTCTCGTCTTACTATCACGCATTCTCAAGTTCCCAACAGGCTGAAACTGCATCAAAACGAATTTGTAAGGTCTTGGATGTTAATCGGGAGAATGAAGGGCGTATGGAAGAATATGAAAAGTTAGCTAGTGATCTCTTAGAATGGATCAATAAAACAATGCCATGGCTGTTGGATCACACCTCAGATGGGACACTTCCTGGAGTGAAGAAAAAGCTTGAAGACTACCGTCAATATAGAGGAAATGAAAAACCTCCTCGTGTGGAGGAAAAAGCTAATTTAGAAACACTTTTCAACACTTTACAAACCAAACTGCGTTTAAACAACCGTCCTTCTTATATGCCAAGCGAGGGCAAAATGATTAATGATATTAATGGTGCATGGAACAATCTGGAAGGTGCAGAAAAAGATTTCCAAGATTGGTTATTGCAAGAGTTACGAAGAATGGAGAGACTTGATCATTTAGCTGCAAAATTCAACCATAAATGCAACATTCATGAAGCTTGGACAGAAGGAAAACCTGAACGTTTGCAACAAGATGATTACAGTGATGCCAATTTAGCTGATGTTTTGGCATTGATGAAGAAACACGAAGCATTTGAAAGTGATCTTGCTGCCCATCAAGACCGTGTTGAACAAATTGCTGCCATAGCCCAAGAGCTAAATGCTCTGAACTACAGTGATATACAAAATGTCAATTCACGATGCCAGAATATCTGTGATGGCTGGGAAAATCTAGGACAGTTGGCTGTAGACAGAAGACAGCATTTAGAGGATTCCAAAGCACGAAGGGAGCAAATAGATATGTTGCGATTGGAGTTTGCTAAGAAAGCTGCGCCATTCAATAATTGGTTGGAAGGTGCCAAAGAAGATCTCATGGACATGTTTAGCGTTCATACAATTGACGAAATTCAGGAACTTCTCGATGCTCACGAAGCTTTCAAAGCTAATATGTCGGCTGCACAAGCAGAATACGATTTAATAACAAGTTTAGTCCAGGAGTTGAGGGATTTAGGATGTATTGATAACCCCTACACAACATTAACACCCGAGGAGATACAAGAAAAATGGAGTGAAGTTCTTGATCTTGTTCCACAACGTGAGGATCTACTGAGGAAGGAACATGAAAATCAACAACGGAATGAACAATTACGAATAACTTTCGCTCAGAAAGCTAACATCGTTGGACCTTGGATACAACAGCAGACAGAAAATTTGCGAAGCATAGGTATTCAAAACCACGCATCATTGGAGGAAAATCTTAAAGCATTACAGAACTTTGAAAAAACATCAACTGCAAATAAACCAAACATTGATGAACTTGAAAACATTAACCAGGGTGTCCAACAAGCTCTTATATTTGAAAATCCACACACGCATTACTCTATGGAGGTGTTACGAGTTGGCTGGGAACAGTTACTAACTGGCATAGCCAGAAATATTAATGCGGTTGAAAACCAGATTCTCATGAGAGACTCTAAAGGAATAACCGAAACTCAGATGAAAGAATTCAGAGATACCTTCAATCACTTTGACCGGGATCATTCGATGGCTTTAGAGCCACATGAATTTAAAATGTGTTTGATCAGTTTGAACTATAACTTAAAGGAAGGTGACAAGGGCGAAGAAGAATTCAATCGGCTTATGTCTATTGTTGATCCGAACGAGACCGGAAAGGTCTCATTCCAAGCTTTTGTTGATTTCATGACGCAAGAAGTTTCAGATTCTGACACCGCGGAACAAGTAATGGATTCTTTCAAGATCTTGGCTGGAGATAAGCCTTACATCACAGCAGATGAACTACGGCGTGAACTGCCGCCCGATCAAGCCGAATATTGCATCGCAAGAATGGCTCCTTATGAAGGAGATGATGCCGTCGACGGAGCCCTAGATTACATGTCCTTTTCTACAGCATTATACGGAGAAAGTGATCTCTGA

Transcript

Csp0G458430

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055001 all species →	Biological Process	muscle cell development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G458430.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.