Gene detail

Detailed information of Csp0G473380 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00854:11599192...11679606
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G473380

ATGCCAGAGATCTCTGGCGTGGATACAAACAACAGCAATGCATCATGCATGAACTATGTTCCTAATTCAGCTGATTGCTCACCAATCAAAAGAACCACAAAGCAAAGTTCAAAACGGGTATTAGATGATAGTGATGAAGAAGATACTGTGACACAGATAGATGTTAATGGAGACAAGAACGAAGAATCTAATTCCACTGCGGTAAATGAAGATTCTTCCCCACCGTGTTCAAGTAGAAGAAATGGTGTAACGCCCAAGAGAAAGACTGGTACTACCGAAAACCGTCAAAAAACTAGAAAACCGTCAAAAAACAGAAAACCGTCCGAAAAAAACCGAAAACCACCGAAAACCGTCCAAAAAAACCCGAAAAACCGTCCAAAAACCCAAAAACCGTCCAAAAACCCCGACAACTGTCCCAAAAGACCGAAAACCGTCCAAAAAATCCGAAAACCATCAAAAAAGACCGAAAACCGTCCAAAAAGACCGAAAACCGTCCAAAAAAACCGAAAACCGTCTAAAAAACCGAAAACCGTCAAAAAATCGAAAACCGTCCAAAAAACGAAAACCGTCCAAAAAGACCGAAAACCGTCCAAACAAGCCGAAAACCGTCCAAACAAACCGAAAACCGTCCAAACAAACCGAAAACCGTCCAAAAAAACCGAAAACCGTCAAAAAATCGAAAACCGTCAAAAAAACCGAAAACTGTCCAAAAAGACCGAAAAACCGTCCAAAAAACCCGAAAACAGTAAAAAAAAACAGTATTATAATTATAATTATTATAAAAAGACCGAAAACCGTCCAAAAAATCCGAAAACCATCACAAAAGACCGAAAACCGTCCAAAAAATCCGAAAACCATCACAAAAGACCGAAAACCTCGGAAATTGATGCTACAGAATACAATCCAGAAAAGAATTGCTATGATCCAATAAAGCATGCGTGTTGGAAATATAAGGAAAGAGTTCCATATCTGGCCATCGCTCGAACGTTTCAATCAATAGAAGACATCTCTGCCAGGTTAAAGATTACGTCAACTTTATGTAATTTATTTCGTTCGGTGATAGCCTTGACCCCAGATGATCTCATTCCTTGTTTGTATTTATGTTTAAACAAGCTGGCACCTGCTTACGAGGGAATAGAACTGGGGATTGGTGATGGTGTTTTGATTAAAGTTATCGCGGAAGCCACTGGTCGCAGTACACAGCAAGTTAAAATAGAATTTGGTGAGAAAGGTGATTTAGGAATAATTGCAGAGGCAAGCCGTTCAACACAACGCACAATGTTCGCTCCACCGAAGCTTACAGCTGTGGCTGTCTACAGCAAACTGAAAGAAATAGCCCTTATGACTGGACATTCATCTGTGAATCGTAAAGTCGATAAAGTAAAAAGTATGTTTGTTGCATGCCGCCAGTCTGAAGCGAGATACCTGATCAGGTCCTTGGCTGGAAAGTTGCGCATTGGCCTTGCTGAGCAATCTGTGTTGAATGCTTTGGCGCATGCCGTGGTATTGACACCACCCAGTAAAGATTTCCCTCCCGAAGTTATTGACGCTGGTAAGGGTTTGTCGGCCGAAAATTTAAAGAAGAAATTGGACGAGGCAGCTTTATCCATAAAGACATGTTACTGTGAACTTCCCAACTACAACATCCTCATTCCTTCATTGCTTGAACATGGTTGGAAAGATTTATCCAAGTACTGTCACCTCACACCAGGTGTTCCATTGAAGCCGATGCTGGCCCATCCTACTAAAGGTGTCCAAGAAGTTTTTAAGAGATTTGAAGATGCCTCGTTCACGTGCGAGTACAAGTATGATGGCGAAAGAGCGCAGATTCATGTCCTACAGAGTGGTGACATCCGTATTTACAGTCGTAACCAGGAGAACAACACGTCCAAATACCCTGACGTTATTGCACGAATGTCGAAGGTTTTGAAGGAGGATGTTAAAACGTGTATCATTGATTCAGAGGTTGTGGCATGGGATCCGGAAAAGAAACAAATTTTGCCTTTCCAAGTTCTGAGTACAAGAAAGAAAAAGGATGCTGCTGCCTCGGAAATAAAAGTTCAAGTTTGCATTTACGCATTTGATTTGCTATATCTAAATGGAAAGGAATTTGTGTTCGCAAAGGCCATGTCGTCAACAGACACTGATGATATTGCAGAATTCTTTGAAGAGTCTATAAGAGGTAACTGTGAAGGACTTATGGTGAAAACGTTGGAAGTGGACGCCACTTATGAAATAGCCAAGCGATCACATAATTGGTTGAAGTTGAAGAAAGATTATCTGGAAGGCGTTGGGGATACGCTAGACGTGTTGGTGATCGGGGGATACATGGGGAAAGGAAAACGAGCTGGCCGTTTTGGTGGGTTCTTAGTCGCTTGCTACGACGAGGAGAAGGAAGAGTTTCAAACAATCTGTAAGGTAAGCACAGGATTGAAAGACGAAGAGTTTGAAGAACAGTATAAAATTTTCCAAGAACTGATTATTGAACAGCCAAGACCTTATTATCGTTATGACCAGAGTCTCACGCCTGATCAGTGGTTTGATGCAGCGAAGGTTTGGGAAATCAAGGCTGCTGACCTCTCAATATCGCCTGTTCATAAAGCAGCAGCTGGAATCGTCGACTCAGAAAAGGGCATCTCCTTACGATTTCCAAGATTTATTCGCATACGTGACGATAAAAAACCCGAGCAAGCTACGTCAAGTGTGCAGGTAAGAGAGACAGGAGCATTCTGGGATATGCCAGATAATTCTGAAACACATAATATTAATTCTGAAACACATAATATTAATTCATATACATAA

Transcript

Csp0G473380

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04675 all species →	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF01068 all species →	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan
PF04679 all species →	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036599 all species →	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR012310 all species →	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR012308 all species →	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR050191 all species →	Family	ATP-dependent DNA ligase	Interproscan
IPR012309 all species →	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR016059 all species →	Conserved_site	DNA ligase, ATP-dependent, conserved site	Interproscan
IPR000977 all species →	Family	DNA ligase, ATP-dependent	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45674 all species →	DNA LIGASE 1/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003910 all species →	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006266 all species →	Biological Process	DNA ligation	Interproscan
GO:0006273 all species →	Biological Process	lagging strand elongation	Interproscan
GO:1903461 all species →	Biological Process	Okazaki fragment processing involved in mitotic DNA replication	Interproscan
GO:0003909 all species →	Molecular Function	DNA ligase activity	Interproscan
GO:0071897 all species →	Biological Process	DNA biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10747	LIG1; DNA ligase 1	EC:6.5.1.1 EC:6.5.1.6 EC:6.5.1.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.