Gene detail

Detailed information of Csp0G474380 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00854:13253258...13278118
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G474380

ATGGAGAATGATTCAACTCCAGATTCATGGGATGGTGTTGACGATAGTGGTGCTGATACAAGTCAAAATATTACTGCTTTTAATTCATTAAATATAAATTCAAAACCATTTGTTCCTAACGTCAATGCTGCTGTATTTGTGCCGTCTTTTGGTAAAAGTCCTGAAACCAACGATTCAATAGGAGAACCAAGCAGGCAAGAAGAGATAGATGATGATAAAGATGATGATAAAGATGATGATAAAGATGATGATAAAGATGATAATCCACATAGTTTAACACAGCAAAGTCCAGAAGCCTCAAGAACTGCAAGTGGAATACCGACATTCACAAGGTATAAAAGCACCCTTCCATATCTGGAACGATGGCCAGCTGGACTTAAATTTCACAATGAAGCTACAGCTCTTTTCTGTCGTTTTGTAGGAAACACTGTGGTTTTACTCGCTGGTAGCAACAATGAAAACGATCAAGAAAAATGCATCAAGAGGAAATATGGTGATAAACTACTGCAAATAGAAAAACTAGCTGAAATGAGAATTATTTGTGAAAGTCGTATGCTGGGTTCTTGTATTCATCATACGATTATGCTTGCCACCTGGAAAATCGATTGCGAAGAGTGTGAAAGTCATGAAGATCCTGCCAAGGATCCTGGGAAGGATCCCCAAGGATCCTGGTGCAGGATCCTTGAGGATCCTTGCAAGGATCCTGTGAGGATCCTTGAGGATCCTTGCAAGGAATTTCACCAGGAATCAACAAATGAATCAACAGCAAACTCAGAAATAGATGGAAAGTCAGAGATTAACAAAATATCTGGTAAAGAATGTAGTGATGATGCTATGAAAGAAGAAAAACTGATACATCAATCAAAAACCAAAACACAACAAATTATAGATATTGGAATAATGAAAGAACATGTGAATATTGTGTTTATTGGACATGTTGATGCTGGTAAGTCAACCATTGGAGGACAGGTTTTATATTTAACTGGTCAGGTTGATAAAAGAACTCTTGAAAAATATGAACGGGAAGCGAAGGAGAAAAATAGAGAAACATGGTACCTTTCCTGGGCTCTCGATACTAATCAAGAAGAAAGAGATAAGGGTAAAACTGTAGAAGTTGGCCGTGCTACATTTGAGACAGAAAACAAAAAGTTTACCTTACTGGATGCACCAGGTCACAAGAGTTTTGTTCCGAATATGATTGGAGGAGCAGCACAAGCTGATCTTGGGGTCTTGGTTATTTCTGCAAGGAAAGGGGAATTTGAGACTGGATTTGAAAGAGGTGGACAGACAAGAGAACATGCCATGTTGGCAAAAACTGCAGGGGTAAAATATTTGGTTGTTTTGATAAATAAAATGGATGATCCTACTGTCGAATGGGAGGAGCAAAGATATGAAGAATGCAAAGAAAAATTGATTCCTTTCCTTAAAAAAGTTGGATTCAATCAGAAAACAGATGTATATTTTATGCCTTGCTCTGGTCTAACTGGTGCAAATATAAAAGAATCTATCGATCCCCTTGTTTGTTCATGGTACAATGGGATGTCATTTCTTAAATATATTGATGAACTACCTTCACTTCAGAGGTCCAAGACTGGACCTGTACGTCTGCCTATAGCTGAGAAATATAAGGAAATGGGTACTATGATTCTTGGAAAATTAGAATCTGGAACTATAACAAAAGGACAAACGTTAACATTGATGCCAAATAAAGTGTCTGTGGAAGTTATGTCATTATATTCAGATGATGATGAAGCAACAACTGCCTGTTGTGGTGAGAATGTTAAGGCAAAGTTGAAAGGCATTGAAGATGAGGATATCACACCTGGGTTTGTACTTTGTGATCCCTCCTCTCTTTGTCACACAGTGACAACTTTTAATGCTCAGGTTGTCATTCTTGAGCATAAATCTATTATTTGTGCTGGTTATAGCTGTATATTACACATTCATAATGTTGTTGAGGAAGTTACGCTGGTGGGTATCATAGCTTTAGTAGATAAAAAGACTGGAAAGAGAAGTCAACGGCTTCCAAGATTTGTGAAACAAGACCAGATTTGCATAGCCAAACTTCAAACAGCTGGGATAGTATGCATTGAAACATTTTCTAATTTTCCACAGATGGGAAGATTTACGCTTCGTGATGAAGGAAAAACTATTGCCATTGGAAAAGTTTTAAAATTAAAATCTGAATAA

Transcript

Csp0G474380

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000858 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03143 all species →	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004160 all species →	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009001 all species →	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR050100 all species →	Family	Translation factor GTPase superfamily members	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23115 all species →	TRANSLATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0018444 all species →	Cellular Component	translation release factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03267	ERF3, GSPT; peptide chain release factor subunit 3	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.