Gene detail

Detailed information of Csp0G475810 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00854:15538562...15544641
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G475810

ATGACATTGATCCGTGTTCGACTTTGTATTGATCGTGGACCTTGTTTCAAAGCAGAGCAATGTTGGATGTTGGTTGAAACTTCATCATGTAAATTCATTCACGACTTTGAATACTTGATCAGAAAGAAGTTCTTCATGGATGAAGGCCACAACGTTATTTTGAACTTGTATCTTGATGACTTTCTTTTACCATCTCAGGAAAAAATCGCAGTTATACGGGACAACGATGTTATAAGGGTAAAAGAAGATAAAGTACTAGTATTCAACAATGGGAACTTCTCAAAGTCGAATGAGGAAAACAAGAATGAAAATCCAAAGAAAAGAAAGTTTGATGAAGAATCCAGTGACGTAAAGAAGAAAAGAAAAAAGATGAAGCAATCTCCTACCAAGAATAAAAAAGAACAAGATATGGTCTCAGCTACGCAGTTGAAAAACCCACCCCAGTCCCAAGTAGCTTCCACTAAGACTTCTTTAAAGACCTTTAACAAGTCCAAATGCCAAAAAGCTATGAACTTTTTACAGAAAGTAACAAATGACAATAGAAAAAAGGTTTCTGGTGATGAATTTTCAGCTGGTGGTAGCTGCCAAAGGAAAAGGATCAAACATAAAAAGAGATCATTGAAAAATAAGTTCAAGTCAAGTGCTTTGAATTGTATTTTGGAGAAATGGAATTCAGCTTCAAATAACAAACAAAGTAGTGCTCTTGAACAAGTAGGAAATGTAGCTTTGGAGAAAGGATCAAAAGAGGGATTGCATTCTGTATCCAAACCATTAAGATTTGAGAAGGGAGATAAAAAAATCAATAAACCTGTTGAAGATGTCCAAAAGACACACATTAATGCTATCACTGGGTCTAAAGAGGTTTTTGATAGCATTAAAAGAAATGGAGACACAGTAAAAGAAAAGAAAAAACCCTCACTGATTCAATATTCACAAAAACCTCCCATATCTGCCTCTTCAGCAACATCAACAAATTCATCATCTGGATCATCTACTGATGGTGAGAGTAATGCTAACATGGTAAAGAAAAATGCATTTAATGGTCCGACTGTCAGTGAAAGAAATGAACTACAAGAAGGAGCAAAAGTACCACAAACATCAGGTCAGGATGTCAATGAAAATGAACTATACAAACAAAATCAAAGACATAATGTCTGCCCATCAAAGCAAAGTACCAGTAACCATATTAGATTTGACAACAACAGTGAACCTGTGGAAATAGCAGCTAAATTGGCACCTCTACCTAGCTGTCCTAATGTTTTACCTGCTTGTTCAACAAGTATCAATAACAATGCAATTAATGGAACACCAAATTTATCTCCAATTCAACAAAATAATAATGAAGTTCTCTGCCCTATTCCTATCAATGTTCCCCAGAAGGACTTTTCTAAATACCAACCGCTTGTTGGACCTCCAAGAGTGGGTGAAACAGTGGCCTATAAGATATTAGAACTTTCACAGTCATATACCCCTGAAATTTCTCAATACAAGGTTGGCAAAGTTCTTTCATTTGATCCAGCTTCAAAGTCAATGAATCTGAAACTAACAAAGGAATCACTTACACGAGCCACAGGTGATGGCCGTGTTTCATTTAAATTTGAATTGTTTGATGGTGATGATGATGATGAAGAAGAAGATTTATCTGTACTGGTTGAAATACCAGAGGAGGTTGAGGTGCAGTGGTCCTCAATGATTGACCCTAGGCTTATTGTGGCCGATGTCGTTCAATAGCCACAAGAAAACTAGAGTTGTTGCCTGAACCATGCAATTATATGATGCAAGATGCCAAAAACTAAAGTCTATTTCGAGACCAGAAATTATGACCCTGTAGACATCAACAAAAATTAAAACTTAGTCTACAGCCAGTGAATTACAGCCAAAAGGAACATTTTATGCATTCATCTACTAAGCTTGAATTTGGCTATGATTGAAGCATGGAAAAATTCAAAACTTAATTCTATAATATTTGAATGGACTTGCATGATTTCGGGCGCGTAGTTTGTGTGGGCCAGGGCCTGTATATCAGGCGCTGTTTATCCGGCACGTTCACCTGAGTAAACAGATTAATTTTTTTAATGAC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007144 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15862 all species →	Coilin_N	Coilin N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024822 all species →	Family	Coilin	Interproscan
IPR031722 all species →	Domain	Coilin, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15197 all species →	COILIN P80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13150	COIL, CLN80; coilin	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.