Gene detail

Detailed information of Csp0G478420 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00855:1891404...2021278
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G478420

ATGGAAGATGGAAAGACTATAGGCCTTCTTCCTCAAGGGTCTGAACTTATTGCTTTAGGTTCCAAGGGATCGTCCAAATCTCAGGATACAAGTGATTTGAAACCTCTTCCACCTCTAAAACCCATTTCCAGTGGCACTTCAAAGAAGACCAATGCTGGACTACCTGAGAGAAAACGTGACAGTCCAAGTCCCCTTCAACCTCTGCGCCTCGCCAAACGTCCCAAGACATCGTCTCCTCTACCTTCACCAAGTGTTTCTATTGACATTGAAAGCAGTCTAAAGTCTTCAGCTAGTTCTCCATTACCTCCACTTGCTCCTATTGAAGTAAGTGCTGATGAGTTGGAGAAGAAGGTTTTGAAAGCTGAAGACAGTAATGACAGAAATAGAGCCGATGGCTACCTCACTGGAGCCCTGAAAACTTTGAGAAGTAATCGCAATAAACCAGACCCAGCAATGTACCTCAGTTTATTCTGTTTGTTGAAAAGGAAGCCACATTTATTTCGCTCACAGCGTGTGGTGGAGTTTCTCACTACTTTATTGAAGAGAGATACGTCTGTTAATCTAAAAGGCGCCAGACCAAGCCCCGTTATTCCAATAATGGCATGCAACATTTTGTTTTGTGCCTTTCAAGACGAGCAAGATTGGCCAGAGAGTTTTATCAAGGTATGTAGGCGTGGGTATGAATTATCAAGCACGCAGGACAACATTCATTCATATGTCGTGGACTTGATTAAGGATCAATTGACACGACGCCAGCTTGTTGATAACACCACTCGTAATTTACTACGTCTCATGTCGTCAGCGTGCGGCGTGAGTGAAGTGAGATTGCTGTCATCGCAGAGATTGGAAGTGTGGCTGCAGAATCCAAAGCTCAACCGACCCGCTCAAGAACTACTGATGTCTGTTGCTTTCAACTGTGCTGATCACTCCATGGAAGATATTGAAGTTATTAGTAATATTATTAAAATGAGACTGAAAACAAAACAGCTTGCTGCTCATTATATCACCTGTGTCAGAGTGTTGGTTGAACAACATGAGGAGAACCTTGGCACGCTTATCAAACATATTGTGTACAACGAATTATCACAGACGAGAAATCCTAACAACATGTCTTTATTGGGGGTCTTGTTCCAGTATGCTCCCGAAAGAGCAGCCAAGAATCTTGCTCACGTGTTTCAAGACTTACTCATCAACAGAGAGGATTACTTGAGGGCTGTCCGAGCTTTGCTCCGAGAAATTGTTCGTGCGTTGCGCCATGAACTGGATTTTGTTGCGTTATGCCGTGGGCTGATGACGGAAAGGAAGGAGTCTTCGTTTCAAGAATTGGAATCTTCCATCAAGGAAAGAATGTTTTCATCCATCACTGATATGGTTACCGTGACGACGTTTCTCAGTGTCACGCCGGTTGTCCGAGACGCGCTGATGGCGTTCAAACGAGGAGACGTGACAGAAGTGAAAGCTCTTCATGATTTTCAGAAGAATGTGGCGACGATTGAACAAGACGCAGCATCTTGGCTTCATACAGTTGTTCCTCACATGTTTCCAATATCGTCGACCAATTATCAACAAAGTTTAAGTAAATTGCTGTTCATGGAATCTTCAGAGTCGTATTCATCCAAAGACGCCTGGCCATCGGAATGGGAAAGAAGCTTCTTGTTAAGTGCTATCAATGATGTACCTGTCATGGACGATACCCTAACTCGTGTTACTGTCATTGGGCTATCTCCTGAACTGCCAGTGGACGCTCCAAAGGCGTTGAAGTTTGTCGAGACCCTTGTTCAGAGAGCAGCTGCTGTGAAAACTGGTGTCCATCCTATGGAAGTTAATCGATTGAGGTTCATCGATGCCGTTCTTGATCTTTGTGTCTACCACCATCCGCCGAATATCCAGCTGCCTGATGGGTATACTCCACCACCACTAGCCATTGCCAACCTCTACTGGAAAGCATGGATAGTCATCTTAGTCGTTGCAGCGTTTAATACTTCAAATATAGGAGAGGTTGTTTGGAATAAATACCCAACAATAAGATGCTTGATGGAGATGGTCATGACAAATGCTTTTGTGTTCCCACCTCCAACAATGGTTGAAACCGCTGATCAGGTGGAAGAGTTGCAAAGTCTGGAAGCGCAGATTGCAGCGGCAGAAAAGGAGGATATTTTGCTTTTTGAAAGTCATCTCGTCGCAGCGACCACGGGAAAGACTATCACTGAAGGCTCAAGTTTATTAATAAGACAACTAATCTCAATGGTTCCAGATGGCCCAGCAAGAAAGCCGCCCCAGCACATTGTTGAACAACTCAAGACCCTGAACACGACTATTGGACTTGGAAAACTTTTTTGTCGTTGTCGTTCTCCTGATTTTCTGCTGGAAGTTATCCAGCGTCAGGGTGCTTCCCAAAGTAGACCTTGGTTGGCTGAGCTGGTTCTCTCAAGTCAGGAGTCCTTGGATGTTCTTCCAGTGCAATGTTTATGTGAGTTCCTGTTACTCCAGAAACCAGTAGAACAGGGAGAAGAAGAAATTGATGAGAAAAACGAGAAAGAAAAGGAAACCATCAACCAAGTTTTGAGTCGTCTTCAGATGCTGCTGTTTGGAAACGAGGCGTCAGCTCAGTCTACTTCGGAAGCACTGGAATGTTTCATGTACAGACTGCACTCGAGACCAACACAAGAACGAAATGCTGCTGTGAGGGCCCTTCGTTTAATATTTTCATCAAGTGAGGTAGAGGAAGACTCGTCCTGTGAAACATACAAATGGCTTTTGGACAGCATGCCGACATTACCTTATTTTGATGCCGTTTTAAATTCTTTGTCATATGCTCTGAGAAAGGCATGTTATGAAGAGTTAGACTTCCACAGGTTGCAAGCTTACGTTATATTCCTGTCCAAGTACAATCTCTCTAATTCAGCAGAAGATGTCTCAGATCTTTCTCGCCTTGTGTTGGAACGACCAACAGTCTTAAAAAACATCCTTTGCAAAGACACGAACAAGATTGGAAGTGACACGCATCATGCATTACTCAAGGTCTTTTCGTCCGTGGTAACGAGAGCCATGGAAACTAGTTCTGTCAATTTCTCATGGGATGACCACCAAGATTCGATATATGTTCGATGGTCAAGCGAGACAGTGCACGATGGCAAGGCTGCTACTCTTGGTGTTTATATTATTCATGCTACCATGGTGTTGTTGACCTATGGACCTCCATGTGAGGACATGGAGTTGTATGACTACCTCCTAGATTCCTGGTGTCCTGTGGAAGGAAATGTTAAAACGTTTCTCCCAAACTCTGGCGAAGAAGTCTTGCTGTTACCTGATTGGTTGCGCTTGAAAATGATTTGTTCCAGTGTGCCACGACTTGTTGATGAAGCATTTCGTAACATCGAACCTCGTCAATTGGTCATCTTTGCTCAGTCGTTTGGGATTCCTGTCACAAGCACCAGTAAAATACTTGAGCACCTGGACCTTGCCACTGAGGGTCAACCAATGCAAGTCAGTGAAATTCTTCATGACAAAGACTACATGTTCCAATTAGTCAACATTCACAGGTCACGTGGTGCTGTGGGCGGTCAGCGGTTTTGTGAACTTCTAAATGATGGAAATGCTGAACACAGTGCCAAACCTTTCAAAGAACAAAGGATTACTCCACTGAGGTCGTCCAGAGTTTCTTTGGGACATGATGAGCCAATGGCGGTAGATGGTAACACGTCAGTGAGAATAAAGAATCTTGTCGTTAAGATTTTCCCGTTTGGCAAGCACTTGATAACATATTGTGCAAGAGATCAAATGCACTGTGGTTTTCAGTTACAAAAGATGATCAGCAAGGAAGTTTCCCATCTTCATAAAGGTGTCGATATTCCACAAACAATGTCGGAGCAATTCGTTAAGATCATGATAAGGTTTCTAAGTTCAGAGGATGGTCCTTCTTTCAGTAAAGTTTTCTTTACTTCACCAAAATTTTCTCATCCTTACTTAAGGATGTTGATTGCTAGAGAGACAATTTTAGAGAAACAGGGCGACCGTTCTTGGTTTCCTCGTTTGATGGATTTACTGTTTAAACACAAGATAGACGGACCTGTGGCCGCAATAGTCAGAAAATATCAACAGCAACACAGTTCCAAACATCGGAAAACTCGTGCTGAAGCCTGTCTTGATGTGATTCGGGAACAAGTTAAACGTATTGAGTCCGGTGAATCACTCTCTAACAATGAAATAAAAGAAATTATCATCGGCCTAAAGAATCCAAAGAATCATGATATTCGGCCGAAAGAGCTGATGAGTGTGTTGACATGGCTACAGTCCTCAAGATCACCATTGCTTGAAGAATTTCTTCGCTCATTAATCAACCTACTTCTTACTCAAACTGACAAAACATCATCATCTGAGACTAACCAGTTTATTCAGGACATGATTGGTTCGCTAAGCGAACATTGTGACGTCAGATCACATGCTGCCAATGGCGCCATAATTGATTGGTTGCCAGTCCTCGATCCTGATATTGTGAACGTTTGTCCTTTAAAACAAAGGCAGTTGCTATTTGGGTTTTCTGATCACGATGGTGATAGAGGCAGTGGATTGGAGGCACAGTCAGGGATAAGAAGGGATCATGATGTGTCACAAGGGTTACTGTTGTTGGTTCTTCTTACTCATAGTGGTAGCTGGAATACTCTTCAAGACTCTCTTGATTGGTTGCTCTCTCAGGAGAAGGATTTAACAAGGGTTGATCCAACAGCTGCATTGCGTTTTGTTGACAGCTGCTTGAGTATTCCTCAGTTATGGCAAGGTCGAGATAATAAATGTATACTGAATCTGACATCTGAACAGCTGAACTGTATTGTTATGTACGTTTTAATGGAAGGCGAGCAAGTTCTAACAAGAAGTAAAGATTTGACCAGCAGTGGTTCTGAGATTGACAATCTATTGGAAAATCGAGCATCTCTTCTCTTGCGTTGCTCAAAAGGCACGGAGCATAAACTTAGCACAGTCGTTGAAAGCCTTCAGTCTGATTCCAGATGGTCAAAAGAACTGCGACAACAATTTCTTGTTCAACTTTATCTTTACTTACCTGAACTTCTAACATGGGTGAAGGATAAAGAGTCGCTGTTGCGTTTAAGTTTTACGGCCAAAGCGAAATTCAGTAAGTTTGATGGATTTTTTCATCGCATGGTATCAATATTGAGTGAATGTCAACCTGGCAGTGATTGGCACGATCGTGTCAAAGGAGCTGTTTTGCTTTGTAAAAAAATGGCATCGTTGCACCCAGTTCATATTTTGAGACATTTACCAATGATATCTTCACTCCTACGAGGCCGAACGCATCTTACATCGAAGGAGTTCAACAATCAAAATCATTTCTTGTTCTTCAAACACATTCTGGGATTGCTGGATGATCTACGACCGTACATCTTTGATTCCACGCAGTTTATACAAGATGGCCTTCTTGACGCTTTGGACAGCTTTTTTGATCTAATACAGTCTCGTTGCATTCAAGATAAAGAACGTGCAATTGTGGTCGTAAAGTTGGTAGACTTTCTACAGCATTTTCTTACGCAAAATGCGACGACTGCTTTGGAATATCTACAAAGGAAAATCGACCTTCTTGAAGATATCCTGGCAGAGCACTCAGAGCTAACTTCTCTAAAATCACTTCTGGCAGTTTTATCAGTGCCCAGGTCTCTAGGCCGTGAAGAAGTAACGTCACAGAAGGAGACTACGCCCCAGGACACGCGCGTTCCCAGTTCCTTGTTACTGATGACACCTATTTATAGTACATGGACTACTGCACAAATTGAGCCTTTTTTACAGCGGATGGCACCTAACCAACCAGTGACTGAAGTTCTGAATGTTTTGACTGACCTTGATGAAGCATCGAAAAGAAGAGTCGACTTTCTTCCATTTTTCTTGCAAGACTTGATTCGACTTACGAGAGATGACAACGAGGTGTGCCGTGGTAAATCTCACTTATTGATAGTAAGATATTTGAAACAAAATCCCAGGAACAGCAGGTTGGTTGTTGACTGCTATCTTGCGTGTCTTAGTTCTACTGATCCTGAAGTCGCTCTAAGTGCAGCCAGAGTTTTACCCGAAGTTGCTATTCTCTCAGCAGAGAATGCTGACCAACTGCTTGAGAAAGCATTCACGGCAACAACTCAAAAGATTGGAGAGGCAGCACCTCACATCACAAAGACATTGCAACTTTTTAATATGGACTGA

Transcript

Csp0G478420

Protein

Csp0G478420

MEDGKTIGLLPQGSELIALGSKGSSKSQDTSDLKPLPPLKPISSGTSKKTNAGLPERKRDSPSPLQPLRLAKRPKTSSPLPSPSVSIDIESSLKSSASSPLPPLAPIEVSADELEKKVLKAEDSNDRNRADGYLTGALKTLRSNRNKPDPAMYLSLFCLLKRKPHLFRSQRVVEFLTTLLKRDTSVNLKGARPSPVIPIMACNILFCAFQDEQDWPESFIKVCRRGYELSSTQDNIHSYVVDLIKDQLTRRQLVDNTTRNLLRLMSSACGVSEVRLLSSQRLEVWLQNPKLNRPAQELLMSVAFNCADHSMEDIEVISNIIKMRLKTKQLAAHYITCVRVLVEQHEENLGTLIKHIVYNELSQTRNPNNMSLLGVLFQYAPERAAKNLAHVFQDLLINREDYLRAVRALLREIVRALRHELDFVALCRGLMTERKESSFQELESSIKERMFSSITDMVTVTTFLSVTPVVRDALMAFKRGDVTEVKALHDFQKNVATIEQDAASWLHTVVPHMFPISSTNYQQSLSKLLFMESSESYSSKDAWPSEWERSFLLSAINDVPVMDDTLTRVTVIGLSPELPVDAPKALKFVETLVQRAAAVKTGVHPMEVNRLRFIDAVLDLCVYHHPPNIQLPDGYTPPPLAIANLYWKAWIVILVVAAFNTSNIGEVVWNKYPTIRCLMEMVMTNAFVFPPPTMVETADQVEELQSLEAQIAAAEKEDILLFESHLVAATTGKTITEGSSLLIRQLISMVPDGPARKPPQHIVEQLKTLNTTIGLGKLFCRCRSPDFLLEVIQRQGASQSRPWLAELVLSSQESLDVLPVQCLCEFLLLQKPVEQGEEEIDEKNEKEKETINQVLSRLQMLLFGNEASAQSTSEALECFMYRLHSRPTQERNAAVRALRLIFSSSEVEEDSSCETYKWLLDSMPTLPYFDAVLNSLSYALRKACYEELDFHRLQAYVIFLSKYNLSNSAEDVSDLSRLVLERPTVLKNILCKDTNKIGSDTHHALLKVFSSVVTRAMETSSVNFSWDDHQDSIYVRWSSETVHDGKAATLGVYIIHATMVLLTYGPPCEDMELYDYLLDSWCPVEGNVKTFLPNSGEEVLLLPDWLRLKMICSSVPRLVDEAFRNIEPRQLVIFAQSFGIPVTSTSKILEHLDLATEGQPMQVSEILHDKDYMFQLVNIHRSRGAVGGQRFCELLNDGNAEHSAKPFKEQRITPLRSSRVSLGHDEPMAVDGNTSVRIKNLVVKIFPFGKHLITYCARDQMHCGFQLQKMISKEVSHLHKGVDIPQTMSEQFVKIMIRFLSSEDGPSFSKVFFTSPKFSHPYLRMLIARETILEKQGDRSWFPRLMDLLFKHKIDGPVAAIVRKYQQQHSSKHRKTRAEACLDVIREQVKRIESGESLSNNEIKEIIIGLKNPKNHDIRPKELMSVLTWLQSSRSPLLEEFLRSLINLLLTQTDKTSSSETNQFIQDMIGSLSEHCDVRSHAANGAIIDWLPVLDPDIVNVCPLKQRQLLFGFSDHDGDRGSGLEAQSGIRRDHDVSQGLLLLVLLTHSGSWNTLQDSLDWLLSQEKDLTRVDPTAALRFVDSCLSIPQLWQGRDNKCILNLTSEQLNCIVMYVLMEGEQVLTRSKDLTSSGSEIDNLLENRASLLLRCSKGTEHKLSTVVESLQSDSRWSKELRQQFLVQLYLYLPELLTWVKDKESLLRLSFTAKAKFSKFDGFFHRMVSILSECQPGSDWHDRVKGAVLLCKKMASLHPVHILRHLPMISSLLRGRTHLTSKEFNNQNHFLFFKHILGLLDDLRPYIFDSTQFIQDGLLDALDSFFDLIQSRCIQDKERAIVVVKLVDFLQHFLTQNATTALEYLQRKIDLLEDILAEHSELTSLKSLLAVLSVPRSLGREEVTSQKETTPQDTRVPSSLLLMTPIYSTWTTAQIEPFLQRMAPNQPVTEVLNVLTDLDEASKRRVDFLPFFLQDLIRLTRDDNEVCRGKSHLLIVRYLKQNPRNSRLVVDCYLACLSSTDPEVALSAARVLPEVAILSAENADQLLEKAFTATTQKIGEAAPHITKTLQLFNMD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12432 all species →	DUF3677	Protein of unknown function (DUF3677)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR022145 all species →	Domain	Integrator complex subunit 1, RPB2-binding domain	Interproscan
IPR038902 all species →	Family	Integrator complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21224 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034474 all species →	Biological Process	U2 snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13138	INTS1; integrator complex subunit 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.