Gene detail

Detailed information of Csp0G482240 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00856:4059160...4071470
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G482240

ATGCAGGACAAGGCTAAAGGACCTTCCCATTTTCAAGAACTAGTTCTCTCTGGAGACAGTGTTGTTATACGCGGCCAACCTCGGGGTGGACCGCCACCAGAGAGACAACTTGGTCTTTCCAACGTTACAGCACCGAAGTTAGGTCGGAGACCGACGATGGCAGTATTGGAGAGCAAAGACGAGCCATTTGCTTGGGAAAGTCGGGAATTTTTAAGAAAGAAGTTGATTGGCAAGGAAGTATTATTTTCTGTGGAATATAAAGCACCTGGAACAAGAAAAGACTATGGATGCATATACCTTAAAAATGGTGATCAATTACAAAATATTACTGAAGCCAGTGTTATGGAGGGATTGGTGGAAGTTAAACGAGGAGGGATTAAAGCTAGCGATGAGCAGTCAAAACTAATCGAATTAGAAGAAACTGCAAAAGCTGGTGGGAAAGGCAAATGGGCAAGCGATGCCAGTGAGCATGTTCGAGATATTACCTGGTCATTTGAAAATCCAAAGAACTTTGTAGATGCGCATCAAGAGAAGGAGTTTGATGCAATTATTGAGCATGTCCGTGATGGATGCACAGTTCGTGCCTTTCTTCTTCCTGACTTCTATCATGTCACTGTGATGATGTCTGGAATTAAGACTCCAATGTTTAAACGCGAGGAAAATACTGAAATAGCTGAACCATTTGCTGCAGAGGCCAAGTTTTTCATTGAGTCCAGACTCTTACAAAAGGAAGTTAAAATAAAATTAGAAGGGGCATCCAATGCAAACTTCCTCGGAACTATTGTTCATCCAGCTGGCAGCATTGCTGAACTATTGTTACAGGAAGGTTTTGCAAGATGTGTCGACTGGAGTATGTCTGTGCTGAGCGACGGACATGATCGTTTGAGGAATGCAGAAAGGCTGGCAAAACAGAAGAAACTAAGAATATGGAAAGACTACCAGCCATCAGCACCAAGTGTTACTATTGAGAATAAAGAATTTACTGGAAAGGTCACAGAAGTGATCAATGCCGATGCAGTTGTTGTTAAAACGTCAGATGGAGACAGCAGGAAACTGTTTCTTTCCAGTTTACGACCACCAAGAACACCAGCCAGGGAAGATGGAGTTGTGGAACAAAACTCTAGTAACAAGCGAACACGTCCATTATATGATGTACCATACATGTTTGAAGCAAGAGAGTTTTTAAGGAAAAAGTTAATTGGAAAGAAAGTCAATGTTGTTGTGGACTACATCAAGCCCCCAAGTGACGGCTACTCTGAAAAAACATGTGCAACCATCACTGTTGGTGCCATAAATGTTGCCGAAGCCTTGATTAGCAAAGGTTTGGCGACCGTTGTTCGACATAGACAAGATGATGACCAGAGGTCGTCTCACTATGATGAGTTATTAAGTGCAGAAACGAGAGCGGCCAAAAACGGCAAAGGAGTTCACAGCAAGAAGGAAGCTCCAACGCATCGTATTTCAGAGGTTTCAGGAGATGTTTCGAAAGCTAAACAATTTTTACCATCTTTGCAAAGAGCAGGTCGCATCAGTGGTATTGTAGAGTTTGTTGCAAGTGGTTCAAGAATGCGTGTGTATCTTCCCAAGGAAACGTGTCTGATGACGTTACTTCTTGGTGGTATCCAGTGCCCGCGAGTGCAAGCTTCAGGAAACCAAGGAGCTTTGATTAAGGGAGAGCCATACGGGGATAAAGCTTATGAGTTTACAAGAGAGTTCTGCTTGCAGAATGATGTTGAGATTGAAGTTACGACTTGTGACCGAGCAGGGAATTTTGTTGGTTGGCTATACATTGATGACACTAATTTATCATTATCATTAGTTAAGGAGGGTTTATCCAGTGTGCATTTCACGGCAGAAAGAAGCCCATTCTATAGCCAACTTGTTACTGCTGAAGAAAATGCCAAAACTGCCAAGCTAAATATATGGGCAAATTATGAAGAACCCAAAGCAGTTGAAGTAATTGATGACACGCCAGAAAGACAATGTCAATATGAACAAGTTGTAGTAACCGAAGTGGAAGGTAATCTAAGTTTTTGGGCTCAGCATGCAGAAAGTGCTAACCTGTCTGCAAACCCACCAGTCCCAGGATCATATGCTGCACGGAAAGGAGACCTATGTGCTGCGTTGTTTGTTGATGATAATTGGTATCGTGCTAAAGTATTGAAGGTAGCATCACCCAAGGAAGTAAATGTGTTATATATTGATTTTGGAAATATTGAAGTACTTCCAATGTCAAAGTTAAGGGTATTACCTCCTGAATTTGTTAGCTTAAAGCCTCAAGCTGTGGAATATAATCTGGCACTAATACGAGAACCGAATGATGAAGAACTTAAATATGAGTTGAGTGCTGCATTAAAAAACAAAGCAATGTATAATGTGTTTAATGTAAATAAGGAATATAAAGTCAACAACCAGGATTATGTGACCGTTATGCACCCTGACAGTAAAGAAGACCTTGGTAAAAGTTTGATTGCTGAAGGCCTTGCACTGACCGAGAAGAGGCGGGAAAAACGTTTTCAAAAAATGGTAATGGACTACCTTAGTGCCCAAGAGACAGCCAAGAAAAACCGGCTTAATATGTGGCGATATGGAGATATCAGTGAAGATGATGCGAAGGAATTTGGATATCCAACTAAATAG

Transcript

Csp0G482240

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00565 all species →	SNase	Staphylococcal nuclease homologue	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR016071 all species →	Domain	Staphylococcal nuclease (SNase-like), OB-fold	Interproscan
IPR016685 all species →	Family	RNA-induced silencing complex, nuclease component Tudor-SN	Interproscan
IPR047386 all species →	Domain	Tudor domain-containing protein 11, Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12302 all species →	EBNA2 BINDING PROTEIN P100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0031332 all species →	Cellular Component	RNAi effector complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15979	SND1; staphylococcal nuclease domain-containing protein 1	-	Viral carcinogenesis	ko05203	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.