Gene detail

Detailed information of Csp0G482870 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00856:5017766...5041917
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G482870

ATGTCAACAAGTCATGAGGAAGCGTGTTTGGCCAATAATGGCCCAGTGCTAGGACAAAGTTTGAGCAAGTCGCGTAGCCCAAGTGTATCCGACTCGTCGGACGGCGGAGATGAGGAGATTGACGAGAATGCCGCGTTGGACTACATTTTTCATGGCAAACAAGATTTTTTGACTTCAAAAATCATGTTACCCAGCAGTCCTGTTGGTGGTGACAATGATGTTCGTGCAAAAATTGATCCTGATACGCAAGCTAGGTTGGAAGCCCTGCTTGAAGCTGCTGGTGTGGCTAAGTTGGCTGATGGGAAGGCATTTGCTGATCCAGATGTGCTGAGAAGATTGACGTCATCTGTGAGCAGTGCACTAGATGAAGCAGCTGCAGCACTTACTAGAATGAGAACACAAAACAATGGTGTTCCATTGTCCCCCAACCATACATCAGATGCAGGTATCCATAGTTTGGCAAATGCTTGTCTTGAAGGCAATGTTAATGCTGTTAGAAAGCTGTTGGAACAAGGCTGGAGCGTTCATGATTCTACTGACGAGGGTGAAAGCCTACTATCTCTTGCTTGCTCTGCAGGTTACTGTGAGCTCGCTCAAGTTTTGCTAGCCATGAATGCCAAAGTTGACGATCGTGGTAGCAAAGGTGATTGCACACCATTAATGGAGGCTTCGAGTGGTGGATTTCTTGATATTGTTCAACTGTTGCTGGACCACGGGGCTGACGTCAATGCTCAATCGCAAGCTGGTAATACAGCCTTGATCTATGCATGTTGTGGAGGTTATGTAAATGTTGTGAAGGTTTTGCTTGACCACGGTGCCTTGATTGAAGCTCATAATGAGAACGGCCATACACCATTGATGGAAGCTGCTAGCGGAGGTCATGTTAACGTCGCCAAACTGCTTCTTGAAAGTGGTGCCTGTATTAATTCACATTCCAATGAATTTAAAGAAAGTGCTTTGACGGTCGCATGTTACAAAGGGCATGTTGACATGGTTAAATTTCTTTTGAATGCTGGTGCTGACCAGGAGCACAAGACTGATGAAATGCACACAGCTTTAATGGAAGCTTCAATGGATGGCCATGTTGAAGTAGCACGTCTCTTATTGGATCATGGAGCGGAGGTTAACATGCCAGCTGATAGTTTTGAGTCACCACTAACTCTGGCAGCGTGTGGTGGTCATGTGGAGCTTGCGTCATTATTGATTGATCGAGAAGCATTCTTAGAGGAAGTGAATGATGAAGGTTACACTCCACTGATGGAAGCTGCACGAGAAGGCCACCTAGACATGGTTGATTTGTTGCTCAAGAAAGGTGCTGATCTTCACGCCCAAACTGAAGAAACTCAAGAAACTGCGCTGAGTTTAACTTGCTGTGGTGGATTTCAGGATGTTGCAGCTTTTTTACTAGACAAAGGTGCAAATATTGAACAAGGCTCTTCAACGCCACTCATGGAAGCAGCTCAAGAAGGCCATGTTGATCTGGTGAAGTTTCTTCTTAATAAAGCTGCAAAAGTGAACGCAACAACTGCTACTGGAGACACACCTCTTTCGTTTGCTTGTGAAAATGGGCATACTGATGTTGCTGATACTCTTTTGTTGGTTGGAGCTGAAGTGGAACATGAATCCGAAGGAGGACGCACACCACTTATGAAGGCTGCCAGAGCTGGTCATTTGTGCACCGTTCAATTCTTAATCTCAAGAGGTGCTGATGTGAATCGAGCAACAACAACAAATGATCATACTGTGTTGTCGTTGGCATGTGCTGGTGGTTACCTAGCTGTGGTTGAACTGTTGCTGCGACAATATGCTAAACCAGACCATATTCTCAAGGATAACTCTACCATGCTTCTGGAAGCTTGCAAAGGAGGCCACACAGCTGTAGCTAGACTTCTCCTTGAGACGCCACTGAATATCAATCATCAGGAATATCCCTTTGCTTCCATACAACCTCCTTTACCACCATTTACCTCGTCGTCACCCCCTCGTGTCCCACCAGTCCCATCTCTAGACCAGCTGGATGCTAACCTGCCACTCGACGTCAAATGTAGCCACCACGATCTTCTTCGAACGGGTCCGCCATTGGACCTCATTTCCCCAGGTATGCTTGTTAGTGGGGTGTCTCGTCTCAGAATATTTAGTTCTTGTTTGAGAATTTGTATGATTTACGTGAATTTCTTGTACGAGTCCACTGTGATAGGTCGTGATGTTGTTGTTTTCATCGTCGTCGGCGTTGTTGTCGTCATCGGTGAAGTGTCTCCTTGCGAGTACATAACCCCTTCGTCTATACCGCTGACGCCGACCCCTTCGCCGTCGAACCCATCGTTTGAGCCCGCTGTCGACATTGAACGTCAAACGGAGAGCAATCATGACACGGCGTTATCAGTGGCAGCTGCAGGTGGCCATGATGATCTTGTCAACTTACTATTGGCCCGTGGAGCTGAACTGGAACATCGTGACAAGAAGGGTTGTACGCCTCTTATTTTGGCGGCTACCGCTGGCCATGCCTCTACGGTTCAAATGTTGTTGGATAATGGAGCGGAAATCGAAGCTCAGTCTGATCGAACCAAGGACACGGCACTATCACTAGCTTGTTCAGGAGGAAGACAGGAGGCTGTGGAAGTGTTGATCGCTGGTAACGCCAATTTCGAACATCGCAATGTCTCCGACTACACCCCGCTTAGCCTGGCTGCCTCGGGTGGCTACATTGGCATCGTTAAAATCTTGCTTGCTCACGGGGCGGAAATCAACTCGCGTACGGGTAGTAAACTTGGTATCTCTCCTCTGATGCTTGCCGCGATGAACGGTCATACGGCGACCGTAAAGCTTCTCTTGGACATGGGTGCTGATATTAATGCTCAAATTGAAACGAACAGGAACACGGCTTTGACGTTGGCTTGCTTCCAAGGACGGCATGAAGTGGTGAGCTTATTGGTTGAGAGGAAGGCGAACATCGAACATCGTGCTAAGACTGGTCTTACTCCGCTCATGGAAGCTGCGTCGGGAGGTTATGTCGATGTCGGGCGTGTCCTGTTGGATAAAGGTGCTGACGTCAACGCCCCTCCAGTGCCGTCGTCACGTGACACCGCTCTGACCATCGCCGCAGATAAAGGTCATCAGAAGTTCTGTGATCTGCTGTTGTCACGAGGGGCCATCGTTGAAGTGAGGAACAAGAAGGGAAGTACGCCGTTATGGTTGGCCGCCAATGGTGGTCATTTGGAAGTCTGTCAACTTCTTGTACGTTATGGATCAGACGTGAACAGCCAGGACAATCGTAAAGTGTCAGTTCTTATGGCAGCGTTTAGAAAAGGTCATGGCAAGACGGTGAAGTGGTTAGTGCGTCACGTAACGCAGTTTCCATCTGAGTCGGACACCGCGCGATTCATATCCACTCTGTCTGACAAGGAATTACTAAAGAAGTGTCAGACTTGCATGGGGGTCATTCGTCATGCCAAGGACCGACAGGAGGCGGAAGCTGAAAAGAACGCTTCGATCCTGCTGGAGGAACTCGACATGGAGAAAGAACGAGAGGAGGTGAAGAAACAAGCGGCAGTACGACGGCGAGAGAAGAAGAAAAAGAAGAAGAAAAAGTTGAAAGAAGCTGGGACAAGTGATAGGAATATGGCAAGGGAAGAGGAAGGAGAAGAGGAGGAAGAGGAGATGATGTTGATGAAGGAGTGTAACGATGTCGACGGAAGTCCTACGACTGAAAATGAATGTGCTGGCGATACTGATCGCGAGACTACTGAAGCGATGGATGCTTTGACCAGCATTGCAATCACTTCTGCCATTGCGTCAAGCTTAGGAAATAACCATGTTGACGAGGTTTACGTTGCTACGACGACCAAGATCACCAAAGTAGTTGCCTCAACCATGTACACAAGCACCCCAAGGATTAGCGATATGTCTCCTATCACCGTAGCTACTGCGGCTGCGCAATGCCTAGCCGTTACCTTAACAACGACCTCTCCAGCGATGACCAGCTCAGTTGGGCATAGCCGACCGAAGTCTTCACCTGGACCACGTAGAGGAAGGAAGCACGAAGAGGGATGGAATGTAGTGATAAGAAGATCAAAGAAACTCTCTGTTCCGTCGTCTGTCATCAGTCGGGTAATCGGCCGTGGTGGGTGTAACGTAAACGCTATCCGTGATGCAACGGGGGCACATGTGGACATCGATACCAGCAATCAGAAGGCGACTGGCACGTGCACAGTGACTATCAAGGGACCTGTGGAGGCGACGAGACAAGCCCATAACCTCATCCTCACCTTGATCAAAGACCCTGAGTGTGATATCAATGACCATCTCCCTTGTACCAAACCATCCCTTCCCTCCTTCCATCCACTATCCTCTGTGGCTATCACAGAGACTCATGTCAGCACCTGCTTGACACAGGTCCCCATTCTATCCACCAGTGTCAACTCGTATACCCAACCTATCCCGATATCCTGCGAAAGCACGTATCCTCGGCCTGCGTCAACAACCGTATCATCTTCGCATCTTCCCGGAAATGCTCGGTGGGCTTCGCCCACGTACCAAGCTCCCCCGAAGGCGGTGCAAAACGTCGAAATGATGCCGGTAATGACGACGACTGTTACCGAAAGTCAACCGATTATGGTGAGGAGAGTCGCGAAGGCTAACCGATCGCTTGCGGCTCGACAGCTTGTATTTGCGGAAGCAACTTCGGCAGTAGCCGTACCGACGACGACCACTACTCGAGTACGACTACTACTCGACGACGACCACTACTCGACGACATCTTGCGATAGTCGGAACGCGAAACCTCTGAGCTATTCGAACGTCGCCGGTGGGATATTGCCTGGTAACCCCAGCTCGTCTGCCGTTGAAGATCAAGTTGGCTTGAATGGAACATCGCTCCCTCCCGTGATAAGTAACATCTTGTCGCAAGTAGGTCAGACTAGAAGCCCCATCGTATGGAACGAAATGTTCTACGCGACCACACGGCAAAATTGCAACGAAACCGAGGAACCAAAGGAACTTGGGACGAACGAAAGCCACGAGATGTCGCAACCGCTGTCCGTGTCCACGGCTGGTGGCCTCTTTAAGCCACTCCCCCACGAGTTATCCCCACCCATTCCCTCTGGTATCTCACCCGCCTCGAGCTCTTCTCCGACGCTGAACACAACGCCCTCGCCACCAACCGCCTTGCCTTCGGCAACGGAGGATACCGAGAAACCATCTATTCGTCCTATAGGAACCGAGCGAGCTCATCGGCGAACCAACACCAGTCCATCGCCGACACTGGCTCGGGTTCCGCCCTTGATATCAACAGAAGTGACAGGTGGAACAGCAAACAATGTATGGAGTTATTATCCAAATCCTACGTCTGTCTCATCGTGGCCAACAACATCGTTGGACAACCGTCCCATGCCTTCTGTTGTACCAGTAGGTATGGAGTCGACGACTTCACCCAGACCTATTCCTTCCTCCGCCATTCCTCAGTCGTTACCGGTTCATAATACGTTGCAAGACTTCCTCGAAAGACTAGGGCTCGTCAATTATCTCGACCTATTCCAGAAAAATGAAATCGACCTTGAAGCGTTGCTGCTTATGAACGAAACGGACTACGCCGAAATTGGTTTACCGAAGGTTCCAAGTACCAAACTTCTGAACTCAACTCGGAGAATGTACACCCAACAAGAGCTCATTCGTCCTGACTATCGACCTGACTACAGACACAGTCAGGTACGGCCGAACTACAGGTCTGTTCCATCTCCACCTGTCCGGCCCAACGTTCGTTGGACGCAACCAATGCCCGCTCGTCCTATAATGCAACCGCATGGTCTTCCCAATGGTTCTTTATCGTCGAATAGTCCTGAGTCTTATAACGGAGGGCATGGTACCGCGGTTTGGAACACTTGGAGTCGAACGGCGAATTAG

Transcript

Csp0G482870

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004345 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR051631 all species →	Family	Ankyrin repeat and KH/SAM domain-containing protein	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR047373 all species →	Domain	Mask-like, type I K homology	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23206 all species →	MASK PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16726	ANKRD17, MASK; ankyrin repeat domain-containing protein 17	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysogorgia sp. JL179-B06 tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysogorgia sp. JL179-B06, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →