Gene detail

Detailed information of Csp0G483680 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00856:6078649...6092083
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G483680

ATGCCTGGCAAGAAAAAGGATTGTAAAGCTGGCGTGCCAAGTGCTTCTTGGGAGAACCCCGACGAAACTCTTCAAGCTGTAATACTCGCAGACAGTTTCAACTATAGATTTTTACCCATCACACTGGAAAAACCCCGGGCTCTCTTGCCTCTGGTAAACTGCACATTGTTGGACTACACTGTTGATTTCCTTCTCAGTTCTGGTGTGAAAGAGATCTATGTTTTCTGTTCATACCATGTGGAGCAAATCCAGAACTTTATAAACGACCCTGAATGGCAAGGAAAACATTCAGCATGTTCATTTCACACAGTTCTCTCAGAAGGATGTATGTCTCTTGGTGATGCCTTGAGGGAAATAGACCGACGGGCCTCAATTAAGTCTGATTTCATTCTTGTCCATGGGGACTTGGTCTCGAACATTAAACTGGATAAAATAATTAAAGAACATAAAGAAAGACGACAGAAGAGCAAGTCATCAATTATGACAATGGTTTACAAAACTGCCGCACCTGATCATAGAACAAGATGCAAAGAAGAAGATGTCTTTCTTGCTATAGAATCCTCCTCAAACAGAATATTACACTGGGAGAAGACAAAAATGAAAAAGAAATTTTCTCTTCCTTTGGAATTGTTTACTGAGGTTCCTGATGTCAAAATGAGATATGATTTGCTTGATTGTGGAATCAGTATTTGCTCAACTGAGGTTCCACAGTTGTTTACAGATAATTTTGACTACCAAACAAAGGAGGATTTTGTCCGAGGAATTATAATTAATGAAGAGGTCATGGGCAATAAACTTCATTGTTATGTCGTTGATGAGGAGTATGGTGCACGAATCTCAAATATAAGAATGTATGATTCTATTAGTAAAGATATCATTCATCGCTGGACATATCCTGTTGTTCCAGATAATAGTCTCCTTCACTCGGATGTTTACACGTACAACAGACATAATATCTATATTGGACAAGGTGTTTTATTTGCTAGGGATTGCGTGTTGGAAGAAAACGTCGTAGTAGGTTCTGGATCAAGTGTTGGAGCTAGAACTGTCATCAGGAACTCAGTTATTGGGAAACAATGCGAAATAGGTGAAAATGTAGAAATAGAAAATTCATACATATGGAATGGGGTTAAAATAAAAGACGACTGTTCTATTTCAAAGTCAATACTTTGTGACAATAGCATAGTTAAGAGTAACGTGACAATGCAAAAGGGTTCTATATTATCTTTCAATGTTGTGGTTGGGCCAAATATTAGCTTGAAACCCGGTGTCAAGATAACCTTGAGGAAGCGAGATAATGAGGAGGATTTCGGAATGGAAGGATTATCTTTGGATGACGAGGATAATGAAACTAAAAAGTCAGGTTCTTATAATCCAGACGAGGTTGGAAGTGAGGGTCGTGGTTACATTTGGAAGAAAGAAGAGGATTCTGATGATGATGAGGATAACAAGGAATTGACAGACTTGTGGGGTCATAGCGGTGACAATGTGAGTGAAGACGAAAGCAGTGATGACTCCATGTCTGAAGCCAGTCCTCCAGCAAGTCCTCCTCCTGAAGACACCAAATTGTTTTACAACGAAGTATTGGACACCATCCGCAATGCAAGTAAAGTCAATCCTGAGAATCTTGTTCTTGAGATCAATGCTTCAAAATACGCATATAATGTGACATTCCATGAACTAAATCACGCCCTTACCAAAGCATTCCTAGAAAGTATATTCTCAGGTCTTACGACTTACCACCAAGAGATATTGAAAGATCTTAAGAAGGCTGTTGATCATTTACATCCACTTTTTGCTCATTACATGAAGGAAGTCCAGAATCAAAAAGTTGGCATACTAGCAGCTGAGGAGTATTTTATTCAAAACCAAACTGCGTCTCCTGCGTTCCAGACATTTCTTCATTTATTGTACGATCGAGATGTTCTTGAAGAAAGTGTTATTCTCCAGTGGTACAACTCACCACAACAGAGAGAAGATTCAACGTCAAATAAAGCGCAGGAAACAATTCGACAACAGGTTTCTCGTTTCATAACTTGGCTTGAAGAAGCTGAAGAAGAGTCTGAGGAATCTTCCTAA

Transcript

Csp0G483680

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF00483 all species →	NTP_transferase	Nucleotidyl transferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035543 all species →	Domain	Translation initiation factor eIF-2B subunit epsilon, N-terminal	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR051956 all species →	Family	eIF2B Complex Subunit Epsilon	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR044123 all species →	Domain	Translation initiation factor eIF-2B subunit epsilon, W2 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR005835 all species →	Domain	Nucleotidyl transferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887 all species →	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005851 all species →	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03240	EIF2B5; translation initiation factor eIF-2B subunit epsilon	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.