Gene detail

Detailed information of Csp0G486930 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00857:3919755...3932617
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G486930

ATGGAGGACGAAAATGAAGCGAAGATACTTTGTGGGACTTGTCCGGACAGCCACTGCGGAAAATTACTTTATTTTATTTCTGAAATATCAGCTGACGTTCGATGCTCGAATTGTGGACAACGGCACTCGACTGACTCCCTTGTTAACGTGACGGAAACGGACAGTTCTGGTAGTGCTGTTAGAAACCTGTTGAAGTCTATGCTGTTCGACTATTCTCCAACGAGGAAGGGCACTGAACTGGTGAAAGTGAAAGGTTTGTCAAACTACCACTGTAAACTAGTCTCGCCGCTGCTTACGTCCTACGGTATGGACAGAAACAGCGGCAAAGCGAAGCTTCTTTCCGAGATGGGCCAACCGGATGTTTTTGATTGCTCTGTGTTGGGAAACCGTGCTTTCCTCATTGAGAAAGAGCACCTGGAGATTGATGGCTATGGGAGAGATAAAACAGGTTCTCTACGCTATCTCAAAGCTACTTTAGAGCTTATAGACAAAGCCAACGACTACGAAGAGAGTCTTGTGCCTTTGCATGCAGATGGAGATGGACACTGTCTTGTACATGCCATTTCAAAAGCTGTTGTGGGGCGAGAGCTACTGTGGCATTCCCTTCGTCAAAATCTTCGAGACCACTTGGAAAAAGACAACGTCAAATACCAGGCGTTATTTTGTGATTTTTTTAACAATGACGAATGGGACGATATCATCGCCGAGGCCGATCCTGATTTTTATCCCGAAACCAACGAGCCATTTGGTTTGCGGAATATGCATGTATTTGGCCTTGCAAATGTCTTGCACAGGCCCATCATCCTGCTCGACAGTACCGAGGGAATGCAGTCGAGTGGTGATTACTCTGGTGTATTTTTACCAGTGTTATTGCCGGCCGACAAATGCCAGTCGCAAGGTGTCATCAATAAGCCGTTGGTTATTGCTTGGAGCAGTTTGGCGAGGAATCACTATGTCCCACTGGTTGGAGTCAAGGGTCTTCCACTTCCCAAGATTCCTCACTTCCTTTTGCCGAAGGCCTGGGGCGTATCCAACCAGCTCGTTGAAAAGTATATCGAATTCGACGAGAACGGTTGTTGCACGATCGGAGGATCTCGAAACTTACCAGAGCGCTACGTAGAACGGCTTGTCTCTGCAATGGACGATGTCTTCTTTGGGAAGCATTGTGTGCGTCCGCAACTTGTGGCCGATGTGAAACAGTTTGTTAGTCAGTCAGCCCATGCTGTCGGCATTTCCAATTCATGGGCTCAGGTGACCGAGTTCACTCGTCAGGCAGTGGAGGAAGAGACACTGTATCGATGTTTGTCGTGCCAAGCAGTTCAAGAAGCTGATGAGAAAGTCTCGCAATCTTGGCGGAAACCTGGTGGGAAGTTATATACAATGGCTGAAACTTCAACTAATGGCCTTGTATCTGGTGCATTTTACACTTTCGTTGAAGGCCTTGTATGTATGTATGATGCCAGTGAGGATATTTTGAAACTGGTTTTTGTCCAGGGACTATTGTGTGATCTTTGCAAGGGTGCAGTTCGTCAGGTCTGTGCTGATGGTACGGTGAAGTATGCCAATGGTGATCCAACGTTAACCAAGGCTGATACTACAAAGGGATGTCGTTGTGGTTTCAAACATTTCTGGGATGGCAGGGAGTATGACCACGTGCCTAAGAGAATTTCCGTGACCTTGGAATGGAATGGCAAGAATATTGAAGAGGAAGTATTTTGGTTCGAATTAGAAAGTGATCCGAGCCTTAATTCCAATGCGTACGAGATTGCTTCTGTAGTTGTGCAGAGGCACTTTCCAGGAGAGTTTGGGAGTGAGGTGCTGATCAAGAAAGTGGTGGATAAGATCCTTCGAGAGACTGCCGTGAAGCAAGAGGAAGAAGAAGAAGTGCCTCGACAAGCCGGTAACGGACATGGCAATCGAGAGCTATCGTCGGTGTCTGACCTCGGCTCCCCTCCGTCGAAGATCATTTTGATAGGGCCGAAAAAGACGACCATACACAAAGAAGAACTCACAAAGAGCAACGCTGAAAGACTAACAAAAGCCAGGATACAGCATCACGCTGCTTACAGCCAGAAACGAAAGAGCGCTGGAGAATCCCCGAAGAAAACTCCGGGAAGTGCGAAACTGGGGAAACAAGAGGGGAGCCCCAAACAGACACACGAATCCAAGACCAACACAACCGTGGTTTTTGAGGCGCGCGCGGGGAACAGCGCTTTGAGTAGCACACGTGATCGCAAGATTCGTCTGTCGAGTTCCGATGGGAAGCAAGCCACCGTCACTTTGACCCCGGGTACAACGTTCGATGATCTTCAAGAGGCAGTTATTCGATACGGGTTTCCACCGCGGGAATTGAAACCCCCGGAGATTGCCAACGAGGTGCTCCCATTGACGCACGGAGATCGCGTGTCCGTGGAACAATTACCCGAGAAGATAGATCCCGTGGAACAAGAGTCCCGGACGGAGAATTTACCCCCTTTGGAAAATGTGGAGACTGCACAGAAGTTGAACCGTGAACAACTTGCTGTAAACTTGTTGAACTTATTGCGAGGGGCTATGAATGTGGACAGATGGGAGACGTTGCAACATCAGCCGGAGGAATTTGAACGTGGTGGGTATGTTTATGAAAAAGTAGTCAGCGAGATTGGTACCCTTCCTGATGATCAACACTGCAGCATAGCGGACTTACCTGGAAAGACGTTTGCGTACAACGCGAAAAAGGACAGACTCGAGCTATGTCTTGATCACAAACACATCCCAGTGCAACCTCTGGACTCGGCAACCCTACAGGGTCTGGCACGTGCTCGTACCACCGGAGATAAGAACGCGGCTGTTGATCACCCGTCACACGAGGAGTCGGAGGGGCTGGGGGCTTTTAGCGGAGTGCTACGTCATCGAGATGCCGCGCAAGGTCGATCAGCGTTCTCCGGGAAGGGAAGAACTTTAGGAGAAAGTGGGAGGTTTGGTATGGAGAAAGAAAGTGGAGTTACTAGCGATGGTGTTGCCAAGATGGAGGTTGAATATGTTCCAGATACAACGGCGCGTGACGTTGAGAAGACAACGAAAGCGACGACTGACGGTAATATTAATCCTAACAGCATAGATAACGGGGGTGGGGAAGAAGAGATGGTAACAGATATGATAGCGGAACAAAGTAGTAAACAAACTACTTGGACTGATGTCGAAATGAAATCAAGAGACACGGCAAAATCTGAACTTATGACGGGGTACAAATTGCGCGTTGCTCACGAAGTGAGTAGTATTCCACACGAAATGACGGATAATGCCCATGAAAAGGCGGATAATGCTCATGACAAGATAAGTGATGATCACGAAATGATGACTGTCACACACGAAGTGACGGGTGATGCACAGGGGATGACAAGTGATGATCACGAAATGACGAGTATTGCACACGAAGTGACGAATTCTGTACACGAAGTGCCAAATGTTGCGCGCGAAGAAACGGGTATCGCGCACGGAATATCGAGTGCTGTACGCGAAGCGTGTGAAAATGACGAACACGAGGCATCGAATGATTTGAAAAGACTGTCAACGAATTCAAACTCTAATGTCTGTGGTACAGATGTACGGTCTATCATAGATGGTAACATGGAAGATAAGCATCATGTGGGGATAGACGGGGATACTCTGGACAACGTGCATATCGAGAAGATGGAAAAGCAAGCAGAGTACGATAGGGGTACTAAAGGGATAACGAAGGGCACACTGGAGGCTACTCAGGATATCAGAGGGTCAACGGGGGATGATTTACAAGATGAACAAATCCAGGAGAGAGATGAAGAAACAGACAAAGGGACTACAGGGGTAATGTATGGATTGGAGGGTCCATTGGAGGTAAATCAGGTGTAA

Transcript

Csp0G486930

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19437 all species →	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045827 all species →	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR039087 all species →	Family	Deubiquitinating protein VCPIP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843 all species →	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320 all species →	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0035871 all species →	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168 all species →	Biological Process	Golgi reassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G486930.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.