Gene detail

Detailed information of Csp0G487090 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00857:4152241...4172032
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G487090

ATGGTGAACGATATCACATTGAAAGATCCATATAGCAACTTACTTCTTAAGTTTGCTGATGACATGACTGTCAGTGCACCTGTTAATGTCATGAATATAGATATTAAATATTCCTTATGCAATTCAGACTTTTTAGGCTGTGATGTAGAAATTGTTATCGAGGAAATTACAAAAGAAATCAACAGCGACTTTGTTCGGTTACTTCGGATCACCGACGGGAGAAAAATGGAGAATGCGAGAGAACACTGCCTTCAAAATCAGCTGGAACACGCAATGTGCGAATATCAATCTATCAGCACCCTTGGCCATCGTCAACGAATGGACAGTTACCAACAGCAGTTTCCCTCCGAATATCCAAAGAGGCAGAGGATGGAATGGACTTCACATAATAGCGGATACCCGTCTGTTCTAAATCACATTAATTATCGACTCCCTCTCCCACACTTTAGTCCAGAAAATCAGCTCAATCACAGAGCCATAAGCTCCACTGGTTACCCCACTTCGTCGGAGAGCACCTACGTGGCCCATGGTGCTTATATACCTGCTGCCAAACATGGACCCAACACACAGTTAGGTCACCCCCTCGCATCCACCCATGACCCTTCGATCAGCCGTGCCTTACCAATCAGCCCTGCTCCATCGCCAACTCCGCCAGCAGAAGAGCCAATCGAAAGAGTAGCGGCACCTGTTGAAAGGACACTTGGCTGCCGTCTGACTCAGGAAGCAATGCGAAAGTACCTGCAAGAATTGAAAAATAACGAACATATCAACCAAACTGTGATTATCCTTCATGCAAAAGTTGCTCAGAAGTCGTATGGAAATGAAAAAAGATTCTTTTGTCCTCCACCCTGTGTTTACTTGTTTGGTCAGGGCTGGAACTGTCAACAACAAAATCAAAATGCAAATGCCGAAGAAGCAGGGAACAAAGACTCTCAAATTGTTGCTTTCATTGGCATAAGCAGCGGGAATCATGGAGAACATGAATATCAACAGCTGTCCATGGAAGATCGGCTGAATTATTGCTATGGAGCTGCCAAAACATTATTCATATCTGACTCTGACAAGAGGAAGAACTTCATATTATCTGTAAAACTTCAACACCAAAATGGAGATGGCATTGGTATATTCAGCTCTAAGAGGATAAAAGTAATATCTAAGCCTTCGAAAAAGAAACAATCCCTGAAGAATGCAGAGTTATGCATTCAGTCCGGTACAACTGTGGCTCTTTTTAACCGATTGAGATCGCAGACTGTGAGTACTCGTTATCTTCATGTGGAAGATGGAAATTTCCGGGCCAGCAGTACACAGTGGGGAGCATTCACCATACACTTATTGGATGACGAGGAGGGTGAAAGTGAAGAGTTCACTGTGAAAGATGGCTACATACATTATGGTTCAACTGTGAAGCTTGTGTGCTCTGTAACTGGCATGGCACTTCCAAGATTGGTTATTCGAAAGATTGACAAACAAACTGCTTATTTGGACGCAGACGATCCTGTCTCGCAACTGCACAAGGTTGCCTTTTACATGAAGGAAACGGAACGAATGTACCTTTGCTTATCACAAGAACGTATTATTCAGTTTCAGTCAACACCTTGTCCTAAAGAACCGAAGAAAGAGATGATCAATGATGGTGCCTCGTGGACAATCATCAGTACAGACCGAGCAGAGTATACTTACTACGAGGGAATGGGTCCAATCAGCTCGCCCATCACGCCAGTGCCGAGAGTTTCCAAGCTGCTACTAAACGGCGGAGGTGACGTGGCCATGCTTGAAATCACTGGGCAAGACTTCACGGCGGATTTGAGAGTTTGGTTTGGCGATGTTGAAGCGGACACAAATTACAGATGTGGCGAGAGCCTGCTGTGTCTCGTTCCCGATATATCCGCGTTCGAATGTGGCTGGAAGTTCACCCGTCAGCCGACCCAGGTCCCTGTCAGCCTCGTTCGTGATGACGGCATCATTTACCCTACGAACCTGACTTTCAACTACACGCCCGAAGCCGACGAGAGACCGCGTTGCATTGAGACGAAAGTCATTCGCAAGGGATTCTCGTCAAGTCCCAGAAGCGATGTCACGTGA

Transcript

Csp0G487090

Protein

Gene family

Family type	Membership / link
Transcription factor family	CSL · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09270 all species →	BTD	Beta-trefoil DNA-binding domain	Domain	Interproscan
PF09271 all species →	LAG1-DNAbind	LAG1, DNA binding	Domain	Interproscan
PF20144 all species →	TIG_SUH	TIG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040159 all species →	Family	Suppressor of hairless-like	Interproscan
IPR037095 all species →	Homologous_superfamily	RBP-J/Cbf11, DNA binding domain superfamily	Interproscan
IPR015350 all species →	Domain	Beta-trefoil DNA-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015351 all species →	Domain	RBP-J/Cbf11/Cbf12, DNA binding	Interproscan
IPR036358 all species →	Homologous_superfamily	Beta-trefoil domain superfamily	Interproscan
IPR038007 all species →	Domain	RBP-Jkappa, IPT domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10665 all species →	RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06053	RBPSUH, RBPJK; recombining binding protein suppressor of hairless	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.