Gene detail

Detailed information of Csp0G498640 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00887:1234288...1238223
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G498640

ATGGCCTCATCCTTACCACCATTCCCAGCGTTTAATGTTGATGACGACCCTACCGCGACCGGTCAACGATGGGACAAATGGAAAAAACGTTTTGAGAATTTTCTTCTCGCTATGGACATCGATGACGATACACGCAAACGTGCACTTCTATTGCACTACATTGGACCGTCAGCGTTCGACATATTCGAAACTTTAACGGACACAGGTGACGCAAAAGATTACAAAAAAGCCATGGAACGTCTTACAGAGCATTTTACACCGCAACGCAATGTTGACTACGAAACATACCGTTTCCGTCAAGCCCGACAGCAATCGAATGAAACGCTTGGTCAATTTGCCACCCGCCTACGCCAACTTGCGTCGACTTGTGAATTTACCTCTGTTGATAAAGAACTGAAATCACAAATCATCCTTAACTGCTCCTCATCTCAACTTCGCCGCCGCGCACTTCGTGAGTCATCGCTAACCCTCAAAGCCCTCCTCGATTTAGGTCGCACCAGGGAACTGTCTGAAAAACAAGCATCTGGTATTGAATCACACTCACTCACTCCCGATGACGAAGAACTGAACTACACTCGCGCGTCTCAGCGTTCTCAACTCAGTCAATCGCTTCCTGTTCATTTCCCACGTTCCCGACAAGTTTCTGGCCCATCATCTACGTGTGGGCACTGTGGTAATGCCTACCCCCATCAACAAGGTCAAGCCAGCTGTCCAGCGCGAGGTTGCCAATGCCGTTCGTGCGGGAAAATGCATCATTTTGCTCGTTGCTACCGTTTTGACGGTATTGGCAAGATGAAAAACTTTCAAGTTCATTTACATATTGATCCTTCCGTACCCCCTGTCACACATCCTCATCGGCGTATCCCGTTTCACCTTCGTAAACGGCTCGATGTAGAACTCGACAAACTCGAACGCCAAGGGATTATCGAACCAGTTGACGGCCCAACTCCTTGGGTTTCTCCTCTCGTTGTTACACCAAAACCAAAGTCTCCTGGCGAGATTCGCCTCTGCGTCGATATGCGACAACCGAATCTTGCGATCCTTCGTGAACGCCATATTACCCCCACTATCGATGACCTCATCCATGATCTTACTGGTGCCACCGTTTTCTCGAAAATCGATTTGAACTCTGGTTATCATCAACTAGAACTCGCACCCGAAAGCCGTTATATCACGACATTTTCCACGCATAGAGGACTACGCCGTTACACACGATTAAACTTTGGCACATCGTCTGCTGCCGAAGTTTTTCAAAATGCAATCCAACAAGTTCTGAGTGGTATCGACGGTGCTCGTAATGTAAGCGATGACATCATCATTTTTGGCCGTACCCAAGTGGCACACGACAAGGCCCTTCGTGCTGTTTTCGACCGTTTACGCTCTAAGAACTTGACTTTAAATTCAAAAAAGTTGAATTCAACAAACCCAGTATCGACACTCACCAAATCAAATCATCCGTGGACATGGACCTCCCGGCATCAAAACGCGTTCGACCAGCTCAAACACCTTCTCACCAGCGACACCGTTCTTGTGTATTTCAATCCCCACCAAGAGGCAACCATCACTGTTGACGCCAGCCCTGTTGGTCTTGGTGCTATTCTCTCCCAAGACAACCGTGTTGTTGCCTATGCAAGTCGGTCACTGACCCCCGTGGAACAGCGTTATTCCCAAACCGAACGAGAAGCTCTCGGCGTGCTTTTCGGTTGTGAACATTTCCACCTTTACATTTATGGCGCGAAATTTTCAATCATCACTGATCACAAACCCCTTGAACGTATTTTCACCAATCCCGCCTCTCGTCCCAATGCCAGATTAGAACGCTGGGCTCTCAAGCTTCAACCATACAATTTTTCAATTTCCTATTCCCCTGGCAAAACCAATCCCGCCGATTATCTATCCCGTCACCCTCTCGCTACAACTCATCCCTCTACTGCATCAGAGCAAGCTGAAGAATACATGGCATTTCTCGCCCATCACACAACGCCGAAAGCCATGACCGTTGCTGAAGTAACACAAGCGACTCGAACCGATCCCACTCTGCAAGCTATCATCGATGCCATCCGCAACAACTCCTGGTCCTCCACTCTTGAGACCCCTGATATGCTCTTTGTCGTTATCGACGAATACTCGCGCTACCCCGAAGTTGAACTTGTACGCTCCACCGCTGCAAATACCGTCATTCCAAAACTTGACCGCATTCTGTCTACGCATGGTATTCTTGCAGAGATTAAGTCTGACAACGGACCCCCATTCCAAAGTTACTCCTTTGCGCAATTCGCACAGTACATGGGTTTCCGACACCGCAAGATCACTCCGGAGTGGCCGAAAGCAAATTCTGAATCCGAACGATTCATGAGAACAATTTCGAAAACACTACGTGCTGCCCACCTCGAAAACAAGAACTGGAAACAAGAATTGTTTCTTTTCCTCCGCAACTACCGTGCTACTCCCCATTCCACCACAGGAGTCTCCCCTGCCGAGCTTCTTTTTGGGCGCAAAATGACCGTTAAGTTACCTGAACTGGTTCCCACCGCACCCTCACGCTCATTATTCGCCGAAACCGATAAAAAAAAAAAAGAGAAGATGAAGACCTATGCTGACGCCGCGTCTAATGCAAAGCCCCACGCAATTAAAGTTGGTGACACTGTTCTCGTGCGTCAAAAACAGGTCAACAAACTATCCTCGCCCTACAACAGACAGCCCTACACCATCGTCAAGATCAAAGGTAGTATGATCACGGCACAAAACGCGACCAGCTATATCACAAGAAACAGCTCACAGTTTAAGAAAGTCAACATCACCAACCAACAACCAGATCAGATAGTGGACGATCCTCTCGATGATATGAAATCAACGACCAACGTCACCAACCACCAGACCATCCTGTAG

Transcript

Csp0G498640

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14893 all species →	PNMA	PNMA	Family	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR048270 all species →	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G498640.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.