Gene detail

Detailed information of Csp0G500210 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00889:407897...442689
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G500210

ATGTTATATTTCCAGGTGTATCTCAACAGTGATATCGCCGAGGTCCTGACTGCTGAGCTTCCCGATAGCGATCTTGGAGAAACCAAGCAAGGTCAAGCTCTTGCCGAGACAGCACAACGCCGGGTGTCTTTCCAGGACGAACTAAACATGGAGTATAACGAAGATCTTTTGTCGAACTATCGAGAACTCCTTCTTTGTGGTAAAACTTCGGATGCATTGGAGTTCGCCGTCACTTCAAACATGTGGGGCCATGCCCTTTCTTTGTCTCACCAATTGGATCCTAAGATTTTCTCTAGTGTTATGGACAGGTTCACTAGTAACCTTCGCAAAGACGACTCTTTACTTTGTTTATACCAACATTTGTCTCATAAACGACCTTCAGTTTTAGACCACAAATCCGGAGGCTGGAGAAAACATTTGGCTATCATGATTGCTAATCCATCTAAATCACCTGAACAAGACATCAAGAACATATTTGCCTTGGGAGAAAATCTAGAATCCCGAGGAATATTCGAAGCAGCTCATTTGTGTTACCTACTCGCCGGTACACCTCTTAGCAAAGAGAACGGTATAGTTTTACTTGGAGAAAACTTAATCGAAAAAAGGCCCGAGTTTGTTGGCCCTGAGTCGATACAGCGAACAGAGATCTATGAATACGCTATGTCGCTCAAAGATGAACACTTCATCATTCCAGATTATCAGGCCTGGAAGGTGTATTATGCCAATATGCTGGCAGAAGCAGGACTTCACAATAAGTCCTACCGTTACTGCGAACTAATCGTGGATAACGTACTGAAGAATCCAACAATGTTCAACCAAATTACGATTGATCAAATTTGCGCGTTGGCATTGCGGCTTCATAAACTTGTATTTGTTACGCCGGGAATGGATTGGATTGAGAAATTACAGCGTATCCAACAACTTAAAGATGTAGGCACCACTAGTGTATATTTACTTTATTCTCTTGTATTTGCAGCACTATCAGTTCCTACCATGTTTGTGCCTAACATGCAGACCAGTGCCGAACCACAAGTGTTCCAGTCGGTCCCCTATCAAATAGCTCCAGCGAACGATGTTCAAGGAAACATCACTGGACAAGTAGGTCAAGAGCCTTACAACGGAAATTTCAACCAGGAGTTTGTAGCCGAGGGACAACTCCCCGACCACGGGAACTACCTCTATGGTAGTACTAACAATACACAAGCCATGGTCACCGATATGCCGGGTGACGAGGAGACAAACGGAATCTCTCGACAGCCATCGGAAATTCACTTCTACGGAGCTGGGGTTAGCAGCAGCCAGTTCTACGAAGGAGATTCCTTTGAGCACTTGAAAACAACACCAAAACAAAACGAGCCTTATTTCGCTAAGTCGGAGAACGCTCCACCTCCTGCGAAGACCGCAGAGGCTCCTAAATCGAAAGCTGAGGAACCTGAGAAGAAAGCTGACGATAAGAAGAAGAAGCTGAAGAAAGACAAGCCAGAAAGTGCTTGGAGTATTGGAGGATTTTTCAAGTCCTTTATCCCAAAAGGGAAAAACGAGATGGTCCTTCCAGACGACAAGAACAAGTCGATTTACTGGGATGAGAAGCTTGGCAAGTGGGTGAACACTGCGGAAAGCGAGGAGGAGAAGGCTGATTTACCACCACCACCACCTATCGACTTTTCCTTGGTCAGTGGTAATACACCAACAATGGCCGCTATCTCTCCTGCAGCCTCGTCCATTCATTCACCCCCTATGTCTTCAGGCATGTCTAACTGTAGTCAGGTGACCCCACCACAAGTTTCAGCACCGCAGGCTCCCATAGCCACCTCGACCCCAGGACGTTTTGTTCCAGAACAACCAGAAGCATCGTTGGTCAACACCCCTCTTACCACCCCTAGTCGGTTCTCGCGGCGTGCGATGGGTTCTTCAGGGCGTAAGTCAAACTACGTGGATGTCTTCAGTGCTTCTGGGTCAACCGTAAAACCAGCAATGCAATCCTCTCCCGCAGTGCTTTTCCAACCTCTGGCACCCGAAGCCTCTTTTACTGACGCCCCGACACCTTCAGCGAATGAAACTCAGTCGAGTATCGACAGCGAAGTCAAATCTCCTGCAAGCAGCCAAACGAAGGCCAATATCAGCATGGTTGCCGACCAGTCTGACTCAAAGATGGGTTGCTGTGGAAATAAGACCGACGCAACGAACAGAATGCCGGACGAGATGGAAATGGGCGATACTGGTCAAAAAAGAAATAGTAAATACGGTAATACCTTAAAATATGACCCAAATTTTAATGGTCCTATTAAAAACAGGAGCTGCACTGATATACCTTGCTGTATTCTTTTTGTCCTATTCATTGTGGGAATGGTTATTGTTGGCATTTTGGCCTTCATGTGGGGGAACCCAGATCGACTTCTCCATCCGGTTAATTCAGAAGGCAAGATCTGTGGCACAGGGGACTACAAGTGGCGGACCCCCCCAGCACGCTGTTGGCTAAATGCACATCTGCTTGTAGTCGGGACATGGTTCCCTCGACTGGTCATACAGGACATGGCTCGCTGCAGAGCATCGCGTCTGCCACGGGATGAGGTTTGTGTAGAAGAGTGTCCAACAGAAAATAATTTGGGACACAAAGTAGACTGCAAAAAGATGAGATGTAAACCTAGCAATATGGTTCACCCATGCAATGTCTCAATAGGTGTCAGAGAAGAAATGACTAAAAATGGAACGTGTGCACCTTACTACTTAGAAAGCCAAGATGTATTAAACCGTTGCATTCCCACTGTATTTAATTCTGCTATTTCTAACATTATATCAAACAAAGATAATGTACCATTAATTAATACAAATGACACAAATGTAACCAAAGAAGATCTTGAGAAAGGGTCAAAAGTTGTTCAAACATTAATTGATCTACAAAATGTTGGTCTGAGGGTTCTTGAGGATGTTAGTAATTCCTGGTGGTGGATATTAACTGCTTTTGGTATTGCCATGGGTGTATCATTCTTCTATATTGTCACAATGAGATGGGTTGCTGGATTAATGGTTTGGCTTACTACTTATGCTGTTTTAACATTATTTGGTTTTGGCGTGTACTATTGTTATACACAATACAAAGAACTGGATGACGCAGGAGCGTCTTCAGAATTCGTTTTCTCCACAGATCTTTCGGTCTACAAGGATTCAAAGAAAACCTGGCTTGCTTTAACCATTATACTGGCGGTAATCTTGCTCGTGCTTATTCTACTACTTCTTGCATTGCGAAAACGCATTCAAATTGCTGTAGCCTTAATCAAGGAAGGAAGCAGAGCAATTTCATCGATGATCTTCTCTCTGTTTTGGCCCATCATTCCTTGGTTACTGCAGCTTATTCTTTTCTCTTGGTTTGTTGCTGTTGGTGTTTACCTTGTCACAACGGGCGATGCAGAATTTCAGCTTAAAAATAACACATCTGTTCAAAATACTCTCTGCAAATACCAGGACTACATTGGTAATGCCAATGAGACTTGTCTGTTTGTGAAATTTGCTGACAATGTCAACGTTTTCCGTCTTCAAGTATATCATCTATTTGGTTGGTTTTGGATAATGAACTTTATCATTGCTATGGGACAGTGCGTCTTAGCTGGTGCATTTGCATCTTACTATTGGGCATGGGACAAGAAAACAGATATCCCAACATTTCCCGTTACGTACTCGTTTATGCGTACAATGCGATATCACACTGGATCACTGGCTTTTGGATCACTTATTATTGCCATCGTGCAAATAATTCGCGCTACTTTGGAGTACATCGAGCATAAACTTAAAAACTCTGGTCAAGATAACCAAATTGTGAAATACATATTAAAGTGCCTCAAGTGTTGTTTCTGGTGTCTGGAGAAATTCTTGAAGTTCTTGAACAAGAATGCCTACATTGAGATTGCCATTTACGGAAAGAACTTCTGTGTCTCGGCTAAAAACGCATTCTTCCTTTTAATGAGAAACATTGTCAGAGTTGTTGTTCTTGATAAAGTCACTGATTTCTTGTTATTTATTGGCAAACTCACAATCACACTTGGAATGGCCGTGGGGAGTTTCTACTGGTTTGCACGAGACAAAAATCTGAACTATTATCTGGCTCCAGTTATCATCATTACGGTTGCAACCTATGTTATTGCTACAGCGTTTTTCAGCGTTTATGAGATGGCCATCGATACCCTCTTCCTCTGTTTCTTGGAAGACCTGGAAAGAAATGATGGTTCAGAGGAAAAGCCATACTACATGTCAAAGAAACTCAAGAAAATCCTGGGCAAGAAAAATAAGAAGAATTCGGATAGCGACTAA

Transcript

Csp0G500210

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12931 all species →	Sec16_C	Sec23-binding domain of Sec16	Domain	Interproscan
PF04515 all species →	Choline_transpo	Plasma-membrane choline transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024298 all species →	Domain	Ancestral coatomer element 1, Sec16/Sec31	Interproscan
IPR007603 all species →	Family	Choline transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12385 all species →	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15377	SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.