Gene detail

Detailed information of Csp0G500650 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00889:843455...847786
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G500650

ATGGCAGGATTTGAAGAGGCTGGCCTTTCTGGTTGCGAGTATATTCGTGAACATTTGTCCAACTGTAGTGAGTTGACTATTGCGATGTTTTTGGAGTCTTTTCAACAAGATAATGGGATCCTTTTACCTTCATTGATCCCGGCTTTGCCGCTCTTGGACCTTCATAGTATTCCCAGGCACGAGTTTCATGTTACAGTTATAGAAAATCTGCGAGAAAAAATGCTCTCAAGGTTTGATGTTATTGGGAGTGAGAAGTTAATGCAGTTATTGGAACAGTCATTTTCTTTTATCAGAGTTCCAGCATTAAGGCCTGTTATTATGGATATGTTAAAAAGACTACCAACAGTACCAGAGAGGTTCATCAAGGTCCTTGCTAATGAATCTGAACTGTACAACAGTTGCTCGTTGGAAGTCAAACGACAAATTTGGATCAAGCATCAGCCTTTATTTGGTGATGCGGTTGGACCATTACTGAATGAATATCTCAAAGATAAGAATGGTTTGATATTCAACACCGACGAATTAAATGGTCAAGATTTTTTGAGCTTCCGTCCAAAGGTCCGACGACAGCATAGTGTCGTCCAGCGGCTTGCCGAGATGATTGGTCGTTCCTTGGAACTTTACAACTTGGTGTTACAGTTCTTGAGGACGTTATTCTTACGTACCAAGGAAGCTCATTATTGTACCCTAAGGGCTGAACTGTTGATGGCGATCCATGATTTGGACATTAAAGAAATCAAGGATGTTGATCCTTGTCATAAGTTCACTTGGTGTCTAGATGCTTGTATCAGAAGTCAACTTATTGATTCAAAAAAGATTAAAGATCTGAAAGGTTATATGAAAGCAGCTAGAGCAGCAGAAGAACAAGTCTTAGGAGACGTTGCCATGGTTTTGTGTGATCCATTTGCTATAAATGTCATTGGTAAAAGTATCATAAAAGTACTACATCATCTGGTTGCTACAGAGGCACTACCAAGGAGTAGCTCTGACTTAACATTTTTATTAAGTCTTCTTCAATTGGGATTGGGAGCTTGGACAATGATTGAAAGCCAGGTGTTTACGGAGAACTTGTTGAGCAACGATCTCCTTGTAAGGTTCATTCCAATTGTCATGGCAACCATGGTTGAAGATTCTGTCTATCGGGTTGAGCAGAAACTAACGAACAAAAAAACAAAAACTGGCATTGAACTTCATCATTCATTTGAACAGTCTTTGTCAGAATACAGTATTTGTTTTACCATTGCATTTTATCTTGCTCTCTATATGGTCAAACATAAACAGAAGCATCTACTTGGCCCATTCCTACCAGCACTCTCATCAGCGTATGGTAACCATCTACTACATGATGCCCATCTTCATTCTCTTATTACATCACTAGCCACGTGGCAAGATGAGTTTGCTAATGCTGACTTTTGTGATGTTGTATTTGATAACTTCTTACTGACCATGTTAAATCAAGAAAGTATCCTTAGACATACTCTCAGACTGCTTCACTTTGTTAACCCCAAGATGGACTCCAACAAAGTCGTAGCAATGTTAACAGCAACTCAACCATCCCCCGAGAACTCTGAGGTGATTCATGAGTTGCATTCATCAATCGTCGACAAAGTGGCAGGAACTAACTCATCTACACCCAATTCTTCATCAATTGAGCAACCGTTGTCTGCTTCATCTTCAGGAAATTCTGCTATGTCGTCACCACTGAACTATCTCCCACCTTCTTCTGTGTAGATAGGAGATGGAGTATTACAAATAATGTTAACTTGATTCATTAGATGTGTGAAGTTGATTGTCCAGGTTGTTGTAGACTAAGTCTTGAGAAAGACTATTGTTGGTGACTGACGTTTCAATGGCCTCAGTGGCGAAGATGATGATTGCTGCTTAAGCCGTCGAAACATCAGTCACCAACAATAGTCTTTCTCAAGACTACAACAACCTGGACGATCAACTTCACACATCTTATTAATAATTTGTGCAACAGTTGTAGCATACAATGTGTTTTATATAGACAGAGTGTTTTTTATTACAGCCACTCATTGTGAAAGATATTCAACCAAGAATATAGCTGGTGCAATTAGGTCTTGCACCAGTATGTTACTCCTTATTAAATGTAACTAATGACATAAATTTTACAAAATTTCCAGTGTAAATAATAGTGTTGTAAAAGCAATAAAGAATGTCATAAATAAAAAAATTAATATAATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06209 all species →	COBRA1	Cofactor of BRCA1 (COBRA1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010405 all species →	Family	Cofactor of BRCA1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13503 all species →	NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15180	COBRA1, NELFB; negative elongation factor B	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.