Gene detail

Detailed information of Csp0G520780 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00930:1177723...1191171
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G520780

ATGTCTCGGCAACAGAAATGGTTGCTTACGATTTACGTGTCCGATCTGAACGTGGAGAAAACCTTGGAGGTGACTGGCCAGACGTTTGTGGGCAATTTAATGGTCGAATTGGTTAACAGACTTGGTGTATCGAGAGATTGGTCTGACCACGCTCTGTGGTGGCCACAGCGAAAAGCATGGCTCCTTCGTTCACGCGTCACGCTCGATACATGTGGCGTCCAAGCAGACTCGAAGCTGCAGTTTACGCCGAAGCACAAGAACGTGCACCTCCAACTGCCAGATCTACAATTCATCGACACCACAGTGGATTTCTCCAAGAAGGTGTTTCATGCTGTCACAGAAGTGTGTGCGCACTTCATCATTAGACATCCCGAAGAACTCTCCTTGCTCAAGCCCCCTGCACGAAGTGGCGAGAAGAAAGAAAAGCGACCCCGCCGCTCCACCAAGCGACGAACCTCTCAAGGTTCCGTGCACAGTAATAACTCTGATGAAGTAATGAATCCAGCAGGGACAGCCGTAAGCGCTGATGGAAGACTCGCCGTCCCTGGACAACAGACTCGATCGACCGGGACAGCCAGTCTGAATGGCAGCGCACACAGTACTTCGACTCCTGGTTCACCAAAGAGCCACCGGTCTTTCGATAGTTTGGATTCGGAAAACCACATTTTATCCTCGAGTCCATCTGTGCCATCACAGGAGTCCATGGAGACTTTTTACCGCGCCAAATCATTGCAAGAGAAGGTCGTCTTTCACGCTGGGTGGCTTGATTCATCCAGATCCCTTATGGAGCAGGATATAGAAGAAGATGAGCACTTGATGCTCAGATTTAAGTATTATTCATTTTTTGACCTGAAGCCTGCTCTTGATGATGTGAGAATCAATCAATTATTTGAACAAGCTAAATGGTCAGTTCATGGAGAGGAGGTTGATTGCACTGAAGAAGAATTGATGACGTTTGCTGCTCTGCAGTTTCAAGTGAACATAGCCTCAGCTTCGCCACCAGTGGAAGATAATAGTAAACAAGAACAAGATGATGATATTACAAGTGCATTGAATGATTTACAGCTAACTTTGGAAGGAACAAGTTCACCAGCATCCCAAAAGACTTTGAACCAAATGCCTGAGCTAAGTGACTGGTTGATTCTAATAAAACATAAAATGTTAGGAATGAAAGACAAAAAGAAATTTTGGTGTGTATTCCGTGATACTTACTTTTCATACTTCAAATCCAATGAAGCTGCCATGGGTGCTCCTATTCAAAAAATTGACTTGCGAGGTTGCGAGGTGTACCCTGAAGTTAATGTACAAAAGGAGAAATTCTGTATAAAATTGAAGTTTCCAGATAACGAAGAAATGAGCGACCTTGAGCTTGGATTGTCAAGTGAGGTACAGTACTCCAAGTGGATGGGTGCCTTTCGTTTAGCTTCTAAAGGGAAAACAATGGCTGACAGCACCTATGAATCTGAAGTTCATGGGATCGAAGCGTTTTTGGACATGCAGCGCAACAAAGATAAATCATCACCTGCTGGAACTGGACCTGGGGGAGTACAAATCCAGCCTGAAGATCTCGTACCAACTAGAATAATGAAGAAATACAAAGCGAAGCAGGTTGCTGCGAGGATTTTGGAGGCCCATTCTTCGTTAAATTTGATGACAGTGATGGAAGCAAAAATGCACTTTATTCGAAAATGGCAAGAGTTGCCTGACATTGGTATAACTCATTACGGAGTCAAGTTCAGAGGAGACAAGGTGTCCAAAAGAGAGGAAATCCTTGGCATTGTGGACACAAAGATCACCAAGATAGACGCGATGAATGGTAAAATATTGAACAGTTGGCGCTACAGTGTGATGCGTTCGTGGAACGTCAATTGGGAGACGAAAGAAATGATCATCGATTGCGAAGGAGAACGAATACGGTTCATTTGCACGAGTGCGGATATCAAGAGTATTCACGAGTTCATTGGTGGCTACATTTTTCTATCCATGAGAAAGGATGTCAACCAGCCGGTTGATCACGAGTTATTCTTCAAGCTTACCGGAGGTTCGGTGCAATAG

Transcript

Csp0G520780

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006404 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18124 all species →	Kindlin_2_N	Kindlin-2 N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR037843 all species →	Family	Kindlin/fermitin	Interproscan
IPR040790 all species →	Domain	Kindlin-2, N-terminal	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16160 all species →	FERMITIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055 all species →	Cellular Component	cell-substrate junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17083	FERMT2, KIND2; kindlin 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.