Gene detail

Detailed information of Cxam_g1386.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_174826701.1, cold shock domain-containing protein [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P72366	Cold shock-like protein CspA OS=Stigmatella aurantiaca (strain DW4/3-1) OX=378806 GN=cspA PE=3 SV=1
P0A970	Cold shock-like protein CspD OS=Escherichia coli O157:H7 OX=83334 GN=cspD PE=3 SV=1
P0A969	Cold shock-like protein CspD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspD PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala