Gene detail

Detailed information of Cxam_g1486.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170429046.1, carnitine 3-dehydrogenase [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5LTH8	L-carnitine dehydrogenase/betainyl-CoA thioesterase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=SPO1436 PE=3 SV=1
Q7D3B2	L-carnitine dehydrogenase/betainyl-CoA thioesterase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu5344 PE=3 SV=2
Q92NF5	L-carnitine dehydrogenase/betainyl-CoA thioesterase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=bcoE-bcoF PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF13279	4HBT_2	Thioesterase-like superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026578	Family	L-carnitine dehydrogenase	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR029069	Homologous_superfamily	HotDog domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0050104	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27497	K27497; carnitine 3-dehydrogenase / betainyl-CoA thioesterase	EC:1.1.1.108 EC:3.1.2.33	Enzymes with EC numbers	-	deepkoala