Gene detail

Detailed information of Cxam_g15174.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: XP_032218100.2, survival motor neuron protein 1 [Nematostella vectensis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q16637	Survival motor neuron protein OS=Homo sapiens OX=9606 GN=SMN1 PE=1 SV=1
Q5RE18	Survival motor neuron protein OS=Pongo abelii OX=9601 GN=SMN1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06003	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan
PF20635	SMN_YG-box	Survival Motor Neuron, YG-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047313	Domain	Survival motor neuron protein, C-terminal oligomerization domain	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR010304	Domain	Survival motor neuron, Tudor domain	Interproscan
IPR040424	Family	SMN complex subunit Smn1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39267	SURVIVAL MOTOR NEURON-LIKE PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13129	SMN; survival motor neuron protein	-	Spliceosome	ko03041	deepkoala