Detailed information of Cxam_g15255.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: NUQ47479.1, polyribonucleotide nucleotidyltransferase [Phycisphaerae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8RA43Polyribonucleotide nucleotidyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=pnp PE=3 SV=1
A4IME3Polyribonucleotide nucleotidyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=pnp PE=3 SV=1
Q5L0I2Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=pnp PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03726PNPasePolyribonucleotide nucleotidyltransferase, RNA binding domainDomainInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR015848DomainPolyribonucleotide nucleotidyltransferase, RNA-binding domainInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR012162FamilyPolyribonucleotide nucleotidyltransferaseInterproscan
IPR036456Homologous_superfamilyPolyribonucleotide nucleotidyltransferase, RNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0004654Molecular Functionpolyribonucleotide nucleotidyltransferase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0006402Biological ProcessmRNA catabolic processInterproscan

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