Gene detail

Detailed information of Cxam_g16639.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_065089759.1, DEAD/DEAH box helicase [Acidihalobacter prosperus]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8XA87	ATP-dependent RNA helicase DeaD OS=Escherichia coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
P0A9P7	ATP-dependent RNA helicase DeaD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=deaD PE=3 SV=2
P0A9P6	ATP-dependent RNA helicase DeaD OS=Escherichia coli (strain K12) OX=83333 GN=deaD PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03880	DbpA	DbpA RNA binding domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005580	Domain	DEAD box helicase DbpA/CsdA, RNA-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050547	Family	DEAD box ATP-dependent RNA helicases	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR028618	Family	ATP-dependent RNA helicase DeaD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47963	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0009409	Biological Process	response to cold	Interproscan
GO:0033592	Molecular Function	RNA strand annealing activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0070417	Biological Process	cellular response to cold	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05592	deaD, cshA; ATP-dependent RNA helicase DeaD	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala