Gene detail

Detailed information of Cxam_g18162.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_171126973.1, MULTISPECIES: DeoR/GlpR family DNA-binding transcription regulator [unclassified Ruegeria]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P0ACL0	Glycerol-3-phosphate regulon repressor OS=Escherichia coli (strain K12) OX=83333 GN=glpR PE=1 SV=1
P0ACL1	Glycerol-3-phosphate regulon repressor OS=Shigella flexneri OX=623 GN=glpR PE=4 SV=1
P32144	HTH-type transcriptional repressor CsqR OS=Escherichia coli (strain K12) OX=83333 GN=csqR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00455	DeoRC	DeoR C terminal sensor domain	Domain	Interproscan
PF08220	HTH_DeoR	DeoR-like helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001034	Domain	DeoR-type HTH domain	Interproscan
IPR050313	Family	Carbohydrate Metabolism HTH-type Transcriptional Regulators	Interproscan
IPR014036	Domain	DeoR-like transcriptional repressor, C-terminal sensor domain	Interproscan
IPR037171	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30363	HTH-TYPE TRANSCRIPTIONAL REGULATOR SRLR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan