Detailed information of Cxam_g18861.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: RMX40396.1, hypothetical protein pdam_00025235 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9JLI8Spliceosome associated factor 3, U4/U6 recycling protein OS=Mus musculus OX=10090 GN=Sart3 PE=1 SV=1
Q15020Spliceosome associated factor 3, U4/U6 recycling protein OS=Homo sapiens OX=9606 GN=SART3 PE=1 SV=1
Q5REG1Spliceosome associated factor 3, U4/U6 recycling protein OS=Pongo abelii OX=9601 GN=SART3 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05391Lsm_interactLsm interaction motifMotifInterproscan
PF05843SufSuppressor of forked protein (Suf)RepeatInterproscan
PF16605LSM_int_assocLSM-interacting associated unstructured DisorderedInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR008669DomainLSM-interacting domainInterproscan
IPR008847DomainSuppressor of forkedInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034217DomainSART3, RNA recognition motif 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0061574Cellular ComponentASAP complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22611SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3-Chromosome and associated proteinsko03036deepkoala

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