Genomic Location: :...
NR annotation: WP_171122915.1, MULTISPECIES: tRNA pseudouridine(55) synthase TruB [unclassified Ruegeria]
| CDS | |||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| Q5LLT4 | tRNA pseudouridine synthase B OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=truB PE=3 SV=1 |
| Q1GKJ9 | tRNA pseudouridine synthase B OS=Ruegeria sp. (strain TM1040) OX=292414 GN=truB PE=3 SV=1 |
| Q3IYU1 | tRNA pseudouridine synthase B OS=Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=truB PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain | Family | Interproscan |
| PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014780 | Family | tRNA pseudouridine synthase II, TruB | Interproscan |
| IPR032819 | Domain | tRNA pseudouridylate synthase B, C-terminal | Interproscan |
| IPR002501 | Domain | Pseudouridine synthase II, N-terminal | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13767 | TRNA-PSEUDOURIDINE SYNTHASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| GO:0005739 | Cellular Component | mitochondrion | Interproscan |
| GO:0006400 | Biological Process | tRNA modification | Interproscan |
| GO:1990481 | Biological Process | mRNA pseudouridine synthesis | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03177 | truB, PUS4, TRUB1; tRNA pseudouridine55 synthase | EC:5.4.99.25 | Transfer RNA biogenesis | ko03016 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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