Detailed information of Cxam_g229.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170396549.1, MULTISPECIES: polyribonucleotide nucleotidyltransferase [Ruegeria]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5LN23Polyribonucleotide nucleotidyltransferase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=pnp PE=3 SV=1
Q16CF6Polyribonucleotide nucleotidyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=pnp PE=3 SV=1
Q1GKK5Polyribonucleotide nucleotidyltransferase OS=Ruegeria sp. (strain TM1040) OX=292414 GN=pnp PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013KH_1KH domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF03726PNPasePolyribonucleotide nucleotidyltransferase, RNA binding domainDomainInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR012162FamilyPolyribonucleotide nucleotidyltransferaseInterproscan
IPR004087DomainK Homology domainInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR003029DomainS1 domainInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR015848DomainPolyribonucleotide nucleotidyltransferase, RNA-binding domainInterproscan
IPR036456Homologous_superfamilyPolyribonucleotide nucleotidyltransferase, RNA-binding domain superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004654Molecular Functionpolyribonucleotide nucleotidyltransferase activityInterproscan
GO:0006402Biological ProcessmRNA catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0006396Biological ProcessRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00962pnp, PNPT1; polyribonucleotide nucleotidyltransferaseEC:2.7.7.8
Transfer RNA biogenesisko03016deepkoala

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