Gene detail

Detailed information of Cxam_g25285.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: XP_031564233.1, cuticle collagen 1-like [Actinia tenebrosa]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9Y466	Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens OX=9606 GN=NR2E1 PE=1 SV=1
Q9QXZ7	Photoreceptor-specific nuclear receptor OS=Mus musculus OX=10090 GN=Nr2e3 PE=1 SV=1
Q9YGL3	Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes OX=8090 GN=nr2e1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR050274	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan