Gene detail

Detailed information of Cxam_g2551.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170399840.1, DEAD/DEAH box helicase [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P25888	ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Q2R1M8	DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3 SV=1
Q9Z6C9	ATP-dependent RNA helicase CshA OS=Limosilactobacillus reuteri OX=1598 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11927	rhlE; ATP-dependent RNA helicase RhlE	EC:5.6.2.7	Messenger RNA biogenesis	ko03019	deepkoala