Gene detail

Detailed information of Cxam_g2626.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170431303.1, helix-turn-helix domain-containing protein [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
G3XCU2	HTH-type transcriptional regulator ArgR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=argR PE=4 SV=1
Q47690	Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) OX=83333 GN=mmuM PE=1 SV=2
O31463	Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain 168) OX=224308 GN=ybgG PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02574	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan
PF12833	HTH_18	Helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003726	Domain	Homocysteine-binding domain	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR018060	Domain	DNA binding HTH domain, AraC-type	Interproscan
IPR036589	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11103	SLR1189 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan