Gene detail

Detailed information of Cxam_g3690.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: MBN2490462.1, RluA family pseudouridine synthase [Planctomycetota bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3
P0AA39	Ribosomal large subunit pseudouridine synthase C OS=Escherichia coli (strain K12) OX=83333 GN=rluC PE=1 SV=1
P0AA40	Ribosomal large subunit pseudouridine synthase C OS=Shigella flexneri OX=623 GN=rluC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06179	rluC; 23S rRNA pseudouridine955/2504/2580 synthase	EC:5.4.99.24	Ribosome biogenesis	ko03009	deepkoala