Gene detail

Detailed information of Cxam_g3793.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: KAJ7370419.1, Breast cancer 1, early onset [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9QZH2	BRCA1-associated RING domain protein 1 OS=Rattus norvegicus OX=10116 GN=Bard1 PE=2 SV=1
Q99728	BRCA1-associated RING domain protein 1 OS=Homo sapiens OX=9606 GN=BARD1 PE=1 SV=2
Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR031099	Family	BRCA1-associated	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0031436	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan