Gene detail

Detailed information of Cxam_g3852.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: EDO46859.1, predicted protein, partial [Nematostella vectensis]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q80X82	Symplekin OS=Mus musculus OX=10090 GN=Sympk PE=1 SV=2
Q92797	Symplekin OS=Homo sapiens OX=9606 GN=SYMPK PE=1 SV=2
Q7ZYV9	Symplekin OS=Xenopus laevis OX=8355 GN=sympk PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF12295	Symplekin_C	Symplekin tight junction protein C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR021850	Family	Symplekin/Pta1	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR022075	Domain	Symplekin C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15245	SYMPLEKIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11854	USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala