Gene detail

Detailed information of Cxam_g4124.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170546360.1, hypothetical protein [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P55390	Probable cold shock protein y4cH OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a00060 PE=4 SV=1
Q9Z3S6	Cold shock protein CspA OS=Rhizobium meliloti (strain 1021) OX=266834 GN=cspA PE=2 SV=1
P0A974	Cold shock-like protein CspE OS=Escherichia coli O157:H7 OX=83334 GN=cspE PE=3 SV=2

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan