Detailed information of Cxam_g4834.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: MBN2490957.1, tRNA pseudouridine(13) synthase TruD [Planctomycetota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
C6E4K4tRNA pseudouridine synthase D OS=Geobacter sp. (strain M21) OX=443144 GN=truD PE=3 SV=1
Q39R76tRNA pseudouridine synthase D OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=truD PE=3 SV=1
P60347tRNA pseudouridine synthase D OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=truD PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01142TruDtRNA pseudouridine synthase D (TruD)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020119Conserved_sitePseudouridine synthase TruD, conserved siteInterproscan
IPR001656FamilyPseudouridine synthase, TruDInterproscan
IPR042214Homologous_superfamilyPseudouridine synthase, TruD, catalytic domainInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR011760DomainPseudouridine synthase, TruD, insertion domainInterproscan
IPR050170FamilytRNA pseudouridine synthase DInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47811TRNA PSEUDOURIDINE SYNTHASE DInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06176truD, PUS7; tRNA pseudouridine13 synthaseEC:5.4.99.27
Transfer RNA biogenesisko03016deepkoala

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