Gene detail

Detailed information of Cxam_g6668.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: XP_046858910.1, external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
M1BYJ7	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum OX=4113 GN=NDB1 PE=3 SV=1
Q9ST62	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum OX=4113 GN=NDB1 PE=1 SV=1
Q94BV7	External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NDB2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF00036	EF-hand_1	EF hand	Domain	Interproscan
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR045024	Family	Alternative NADH dehydrogenase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43706	NADH DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0006116	Biological Process	NADH oxidation	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03885	ndh; NADH:quinone reductase (non-electrogenic)	EC:1.6.5.9	Oxidative phosphorylation	ko00190	deepkoala