Gene detail

Detailed information of Cxam_g965.t1 in Cassiopea xamachana

Genomic Location: :...
NR annotation: WP_170397876.1, RluA family pseudouridine synthase [Ruegeria arenilitoris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P50513	Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3
P74346	Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=slr1629 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06180	rluD; 23S rRNA pseudouridine1911/1915/1917 synthase	EC:5.4.99.23	Ribosome biogenesis	ko03009	deepkoala