Gene detail

Detailed information of EGACTEQ4350000304-PA in Actinia equina

Genomic Location: WHPX01000067.1:56149...60486
NR annotation: CAB4039687.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350000304-PA

ATGAATCACAAGAAAAGGCCAGTAACTGTTAGTGATTCTTATCtatcttttataattttaacTGGAGTAATCATGTTTCTGGTTTCATGGAATCTTATATGCTTTGCATATATTAACTTGTGGGAAGACACAGGTCACGCTTATGTGCACCCATCTGTTATCAAGACTCAAGATTTCTTCAATGATTTATCTCATGGTAAATTGATTATGGTCGTATCTATAGACAACAACATTCAGGAGTTGCCGTATTATGAACAGCATGTGGATGATCTATTGAAAGTAACTTTAAATTTCATTCCACAACTTCCGGACTTAATTCCACACGGGGATGTTGAATCACAACCTGGACCACGAATTAATAGACCAACTTGCCCTATTTGTGATAAAACTGTTCGTCGTAATCAAAAGGATGTCTTCTGTGCCTACTGTGATATGAGTTATCATTTCAATTGTGTATCAACTGACCCTGCTACAATTATTAACCCTGTCGACTGGATATGCACTCGATGTACTATGGAACTTGATGAACTTAGTGAGGATACGTCTACAATCTCTTCAATTGACTCGAATGATATCTCGACTTTGGACTCAGATGATCAGGATTATTTAAGTACTACATCAAGCACATCTGAGGATCACTCTTCTGACGATAACCTGGATTACTTTGGATCTTTGAATATCCCAGACAAAGGTTTGAGAGTATGTCAATGGAACGTGCAATGCTTGACTGACTCTAAGTTCGAACAGATATCCTTATTTTTGGCTAAAACAAAGATTGATATATTGGCCCTAAGTGAAACTTTTCTTAGTGAATTAGTTAATTCTAATGAACTTAGAGTTCCTAACTACGAGTTAGTAAGAAGGGATCGTCTTAACAGGAAGGGTGGAGGaatacttatatttattaacGATAAACTTAATCTTAGTAGAAGGGGGGATCTTGAGGATGATAATCTCGAGGCTTTATGGCTTCAGTTAACACCATTTAAATCCCAACGTTCTCTTTTACTTTGTAATGTTTATAGACCCCCTGATACTCCTGTTAACATAGACAAAATGTTTGAGGAAATGTTTGATGCTGCTCATTctgaaaacaaagaaaccatCATTATGGGAGATTTCAATATTAATCTACTTGATAAGAAGGGCAAGTCTCATCCCTTATTTAGAGCTATTTCTACACTTCAAATGGAACAACTAGTTAAGGAAGTAACTAGACCACATGCTCCCTGGGTAGAGAAAAGGATTCGTAAGCCTCGCCAACCACCTTGGTTTTCAAAAGATATCAGTGAGGCAATGAAATTGAGAGACAACCTTCATTTTAAAGCCAGGAATAGTGGTGATAATGACACCTGGTATTGCTATAGGAAACAGAGAAATAAATGTACTACTCTCATTAGAGAGGCAAAAAAAGCTTATTTCCATGGTGCTTTTAAGGAAAATGAAGGAAATCCGAAAGGTCTTTGGAAACATTTGAAATCTCTCAATGGTAGTGATGTGAAGGAAAACATCAATAGATTGCACATTGATGGTTCAGACATTACTGATCCACTTGACATTGCCGAATGTTTTAATTCATACTTCTCGAACATTGCTAGTAAGTTTGATGTTAGTGCTAAATCAGTTGATGCTCAAATTTTTGCTTCGGGTGATTTTTATCAATCTCTTAATACTCATATTAATGAGCTTAATCCTCTAGGTGATAAATTTGAGATTCCACTTATTGACGAAGGCACCGTCTTTAAGGAGCTAAGAACTTTGCCATTGAATAAATCCACTGGCTTAGACGGACTGAGTGCCCGTTTACTTAAAATCAGTGCTCCTGTTATTACACCTGAAGTAACAAAAATTTTCAACACCTCAATAAGAAATGGAGTTTTTCCTGAGTCTTGGAAACTTGCACGTGTCACACCTATTTATAAAGATGGAGATAGGAAGGATCCTAATAATTATCGTCCTATCTCGGTTCTTCCTATTCTTTCCAAGGTGTTAGAAAAACATGTTCATTCTTCACTCTATGAATTCATGACTGACCATAACTTGCTTTGTGTTAATCAATCAGGCTTTCGCAGAGGCCATTCCTGTGAGACAGCCCTAATCAAAATTGTCGACGTTCTACTTATGAATATTGACAAAGGTCTGCTTAGTGGCTTAGTAGCCATTGATTTTCGTAAGGCATTCGATCTTATTGATCATGATGTTTTACTAACTAAGCTCCAACTCTATTGTCGCAGTGATTCAGCCATTGCTTGGTTTAAATCTTATTTGGAAAATCGTCGACAGTCTGTTATGATAGCAAAACGTTTATCCTCTCCTAAATCAGTATCTCAtggtgttcctcaaggttcTGTTTTAGGACCTTTgctttttataatatttgtaaATGATCTATCTTTAATTACTAAAGAATCTACACTTGacatgtatgctgatgatacaactcaaactgTGTCAGGGAAAACTCTTGAAGAAGTTGAATCTAAGTTGGCCGATGAATTTATACCTATTCAATCCTGGGCGTCACGGAACAAAATGATTCTTAACACCTCTAAAACAAAAGTCATGCTTGTTGGTAGCTCTCGTAAACTATCTACTCTTGAACGTGACATTTCAATCGAAGTAGTTACCTACATGTTTGAATATCTCAAGAGAACAAGTGGTTTAAGACAGCCAAACAAGGATCAGCTGCTAATAACTTATCAAAAGCCACACCAGCCTGCCTCAGCTAATACAATCAGCCGCTGGATAAAGTATGTGTTAGGCAAGGCTGGAGTTAATACAAGTGTGTTTAGTGCTCATAGCACTAGGGCTGCAGCTACTTCAGGTGCTAAGGCAGGACACATATCTCTTGAGACTATTATGAAAAGTGCAGGATGGTCCAGTGAAAACACTTTTCAAAAGTTCTACAATATGCCTGTTGTTAATACTGAAAACTTTGGCAATGAATTACTTAAAGTTTGTGATtcacacaaataa

Transcript

EGACTEQ4350000304-PA

Protein

Uniprot

Gene family

Uniprot term	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan