Gene detail

Detailed information of EGACTEQ4350002630-PA in Actinia equina

Genomic Location: WHPX01000226.1:281908...284069
NR annotation: XP_031551756.1, RING finger protein nhl-1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350002630-PA

ATGGAATCGCTTGTTGAAGATCTTAAGAAAGAACTCCGATGTCCGCTATGTAATGATACTTTCACAGAACCAAAGATCTTGTCTTGTTTCCACACATTTTGTAAGCCTTGCGTCAAACGACACGCCGAACAAGTCGACCAAATCAACATCTTCAAGTGTCCTCGATGCAAATCACAGACTTCTCTACCAGAACTAAGCAGCGTCGAAGATCTACAGCCAAGTCTAATACATTCCCTAATGTTGAAGGGTCTGGCGTTGGTAGAAGAAGAAAAGGCTTGTTCGGTTTCTGAGAGTCATTCCTTAGcttcttggtattgttttgatTGTGATCATTCACTGTGTCAAGAATGTCGAGACTACCATTCGTTCTTCCCCAAAGATCACAAGGTCGTTCGTCTGGctgatttgaagaaagaagatattcagttcataataacaagagaaaatcctTGTACAAGTCACCCTCATCACAGGCTAGAGTTCTTCTGCGAAGATTGTGATGCCATGATTTGCGGAACATGCTTGAAACACGATCACAGGAAACATGAGACAATTTCATTGGACAAGTTTGCTTCGATCAAGAAAGCTGTATTGTCAAAGCATATGCCGGTACTAGAGCAGTTGAGATTAGATAACAAGgaaaagcaacaacaagaaaagattgctaacacaatcaaacaacaaggagaaaaggcaaaaaaagaagtcaaagatAAAACCAAGAAGATCATCCAAATACTACAAGACAACGAACGAGAATTGCTGAGACAAATCGATGAGAAGTTGGATACAGCCACAACAAACTTGAATATAATTTATCATATTCCAGCCGTCAAGGAATACATCAAGAATGTGATGGAAAGAGGGCTGGCAAGTGAAATGATGAACATTCAAGGAACACATTGTTCTCAGAAATTCATATTCAACCATATTGCAGCACAGTCTATTGAATTTCTTCCAAATGAGGAGCTGATGCGACAAGCGATTTCAGGGCTGGGAGAAATACAGACTTGTTTGAAAACAGACCATGGTAAGAGTTCTATTCAGGTGAAATCTGAGACAAaagctttaaagaaagaaagtctTATATTGATGACTAAAACCTCTACAGGAGAACTCAACCATGATCCAAGGGATGTTATAGACGTTCAAATCAAGCCtaaagaaaatgtgaaaatagaaaagaaatatgtgaGAACTGATGGTAAAGTAGAAGTTGAATTCATGGCTAAAGTAGCTGGTCAGCTGACAAcagaggttcaagtgaatgggaatcatgtatctaacagtccactagTGGTGAATGTCAAGCCACAAGAGATGAGGAAAACAGGAAGTTTTAACATTAAAGGTAGTGCATGTGGACAGTTGGCTGATCCTCAAGCTTTAGCATTTCTGAATgatacagatttagtcatagCAGACTATTATAATCATAGAATATGTATAGTGAACACTACAACAGGGACATTGGTAAAAACCTTTGGTAACCAAGGTAACGGTGATGGAGAGTTAAGTAATCCACGTGGAGTAcacgttgatgacgatggtaacaTCATTGTATGTGATAGTGGTAATCATCGTGTTAAAGTTTTCACAAGAGACGgtgactatcaatatcagtttggtttgacAACACAGGACAGGTTTACTCCATATGATGTGATCACACAGGATGGACTGTTTTACGTCAGTGATATTAATAATGAcgttattcatgtatttgagaAGAAAGGTAACGTACCGACTAGAATATCGACGATTGGTGGTAAAGGCAGTGTTGATGGTCAGCTGAATGGAGCATGTGGcctggctattgataatgaccatcatctactggtgtgtgataatggtaataatCGCGTACAAAAATTCACATTGGATGGTCGTTTTGTAGGAAGGACTTGTGATGTAATCAAGAACCCTCAatatataactgttttaaagGATGGTCAGTTATTAGTTAGTACGTATGGTTCTGGTGTCTTGTGTGTAAAGTAG

Transcript

EGACTEQ4350002630-PA

Protein

Uniprot

Uniprot term	Description
Q5BK82	E3 ubiquitin-protein ligase TRIM69 OS=Rattus norvegicus OX=10116 GN=Trim69 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala