Gene detail

Detailed information of EGACTEQ4350002766-PA in Actinia equina

Genomic Location: WHPX01000851.1:91246...125727
NR annotation: XP_031572568.1, cadherin-23-like, partial [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

EGACTEQ4350002766-PA

ATGAAGTTCAGAAGAAAATTATTGCCGCTTTGGATATACGCTTTAACATTAATCCATTGGTGTTATACAGCAACCAATCATAAGCCATATATTCCTGATGATACCAGCATTATTATTAAAGTACTAGAAGACACTGCAGTCGGAACGTCTATTCGTAATATAACAGCAGTGGATCACGAAGGACAATACATAACATTTGGTCTGGATGATGTTGGTAAAACAGTGTTCGACATACGCAATTTTAATAAAAGTGTAGGTGAACTGACCTTGAAAGTACCGCTTAATAGAGAATCGGTTAGCACTTACGATTTCCGCGTGACAGTGACGGATGGTGGAGAGGATAGAAAGGTATCAAAGGAGTTCATTCTTAACGTTTTGGACGTGAACGACAACAAACCAATCTTCGTTACACAGCCATATTGGAAATCAATACCTGAGAATACTACTACTGGTACGGAACTTCTGAAAATCGAAGCGACAGACAGCGATCTAGGTTCTAATCAAGTTGTCACATACAGATTTAGTAACGATTCCAACTCTGCTCAGGACAATCCACTTGTTACCTTGTGGAAGACTTCTAAGTTTGCTATTGATAATTTACTTGGAACAATCACTCTTGTGGCACCTTTGGATTACGAAACAACAACGAGGTACTTGTTACCTGTTGTGGCAGAGGATGGAGGAAATCCCAAGCAAGAGAGTCAGACCACTGTTGTTATTGACGTAACTGATATCAGTGACAACCCACCAAAGTTTGAACAATCTGTCTATTTGAAGGAAATCGAAGAAAACATCCCTGTGGGAACAACCGTGCTGACAGTTGTCGCAAGAGATGGTGATGCTGGTATTAACAACCCAATGAAATACGAGATATACTCAGGTAATAACGGTACGTTTGGTATTAGCAGCAGTACTGGTGTCATTACGGTCAACAGTACAATCGACGCCGAGAAGACACAAAGCTACGAACTTCACATTCGAgCTTCTGAAGTTCCCAATCCAAATTCCAACGCTACAGTGTCAGTCCTAATAACTGTGATAGATAAGAACGATAATCCTCCTATCTTTTCACAAAATACCTATTCATTTTCATTACGAGAAGATCTGGCCAAATCTAATCGAATTGTTACTAACCAGTTGATCGTCAGAGATGCCGACAAAAACCCTAACTTTCGGCGCTTCACATATCACGTTACTGGAGGAGATAGCGACAAGTTTCGTATCGACCCATCGAGTGGCGAGGTCCGTATAAACAGTACACTGGACTACGAGACACAAGTCAATTATACCTTTACCaTCGTCGTAACAGAGACAGGAACAGACGAGAAGTACAGTGATAATGCTACTTTTCACTTGACTCTCATCAATGATAACGACAACAAACCTATCTTTTCTAATTCTTTATATAATTACACATTTGACGAAGAGGTCCCCCCAGGGAAAGAGATTGCTGTTATAACGGCAACTGATGAGGATCTTGGTTCATTTGGCCAAGTCACTTACGAGCTGAGTGGCAGTCAGTCTTCATTttttgctGTCGATCGTAATACTGGTAACATCACAGCAGCAAGAACCCTTGACTATGAAGAAGTCCACAGCTACCAGTTTTATGTGATCGCTAGTGATGGTGGTGGAATATTCAAGGAAACTGCTACAATAAATGTTGCTTTACGGGATATCAATGACAACGACCCAGTCTTCACTGGAACGCCATACACAAGCAAGATCAAAGAAAATTTAGCCGCTGGAGTCCTTGCAGTTAAGGTGACCGTCAGCGACAAAGATAGCGAAGACAATGGAAGGGTTTCCTTGAACATTACATCTGGTAACATCGATAACGCTTTTGCTATCAATGCAACTGGTTTTATCACGACAACCAAATCACTGGACAGAGAAGCCACAGCCTCGTATACGTTAACGATCAATGCAAGTGATCATGGTATCCCTCCCAGAAACGTAGCTACAACAGTCGCCGTGGAAGTACTGGATGAAAATGATAACATTCCCTACATAAAGGAAGGAAGCTACATCGTGAAGAACATCAGTGAGAGTGCTGGAGGTGGGACAATCCTGTTTGATTCTCTAACGGGCaccgatgatgatgctggttcGAATGGACGCATAACGTACTCTATGTCTGGTGCAGACGGCCGATTCATATTATATAGTGACACTGGTAGGCTCCAAATCTCTCCGACTGGTCTTGACCGTGAAATTAAAAGTAGCTATGACCTGGTAATAAATGTAACAGATGCAGGCTCACCACCACGACAGaattCCACCACAATACATGTGGAAGTACTGGACACCAATGACAACGCACCAGTATTTAACCCCAAACCATCAGAGGATTCCTCTGCTTACATAATAGAAATAAATGAAGGGCCGAGTACGTTAAACACAGTCATCATTCAGTTGAATGCTACCGACCAAGACGAAGGCCTCAATAAGAAGATAATCTACTCGTTGACAGGAGACGAGCATGGCTTCTTCAGTCTGGATAATACAACGGGAAAGTTGACTGTTGTCAAAGAGCTTGACCGAGAAGATGCACAAATGCCTAAAGATGCTTCTAATAATGGTCGATTCTTTCTGGACGTGACAGCAACTGACCAGGCACAACCTGTTTCAGCCAGGAGATCCGCGACTGTAAGGGTAACTATTAAGGTAAAGGACATCAACGATAACTCGCCCGAATTCCAGAAACAAAGCTTTGAAGAGCATGTAAGCGAGGCTGCACGAACCGGAAGCAACGTGGTCCAAGTATCTGCGGTAGACAAGGACTTAGACTTCTCGGGAAAAGTTCTTTACAACATCACTAATGGGGATCCAATTGGTACGTTTAGCATTTCCAAAACTGGCTACATTTTCATCGCAAAGCCACTAGACGCAGAAGATGTTTTCCTGTACAATCTCACTGTGTTGGCCAAAGACGAAGGAACGCCTCCATTGAATTCTACGGTCTTTGTATTTATTCACGTGGATGACGTCAATGACAACGATCCAAAATTCAACCAATCAACGTACACCGCATCAGTAATGGAAAATTGTGCAACAGGAACATCGGTACTCACTGTCTATGCCTCAGATAAAGATAAAGGATCGAATGGCAATGTCACATACAAGATCTCCAGTGGAAACCAGAATAACGCATTCCAGATCGATGTTGTCACAGGAGTTATTAGCACTGCTGCATCCATTGACAGGGAAGCCATTCAACGGTACATTCTGACTGTGCAGGCTGAGGATCAAGGGCAACCATCAAGCAGGAAGGATTTTGCAGAGGTTCAAATAAGGGTAGACGATGAGAACGATAACAGCCCACAATTCACAGGAAGTCAATTCTTAGCAAATATCGAGGAAAACTCTTCTCCAGGAACAATTATTGCACTGACAAAAGAAATCCATGCAACAGATGCAGACATCGGCATATATGGGAAAATAACCTACAGTCTTGAAGGTTTAGGCGCTGAACATTTCAACATCAACGCCAGCACTGGTATCATAACAAGCAACAGCAGTTCACTGGatcgagaaaaaaataatacttattCGCTTGATGTCATAGCAACAGACGGTGGAAACAGAAACGCATCTGCTAAACTAGTAATCTCCGTAACAGATGTTAACGACGAGCCTCCTAGGTTTTCCCAAGCAATATACTATGCCAATATATCAGAGGATGCCAGTCAGGGAAGCTCAGTTACCATGGTGACAGCTACTGATTTGGACGCAGGAAATAAAGGATCTACAGGCAGCATCATTGTTGATTCTTCGCTGGATCGAGAGTTCAAAAGTTCCTACATCTTAAACATTACGGCAGCCAATATTGTCGAACCTAATTTTGAGGGACACGCCCAGATCCACATAACCGTTACTGATGTCATAGACGACAAACCCTATTTCAGTACACCAACTATGATGGCGAAAATGGCTGAAAATGCGTCAGTTGGAACAAACGTTATCAGAGTAACAGCCTTGGACAAGGATGTTGGTGATAGTGTGACTTATGTCATTGTGGATGGAGACGATTATGAGCAGTTTAAAATCGATAACATAACTGGAGATATATTTACAACAAAGTCGCTGGACAGGGAAAACACTACGAAGCATACATTATCGATACAGGCGAGGGATAGCAAAGGATTAGTGTCTGAGAACAACGTTAAGGTGGAGATAGATGTCGATGACGTAAATGACAACTCCCCTGTCTTCACACAAAGAGAATACATCGTAGACTACAGAGAGCAGTCACCAAAAGACACGAGTATTCTAAAGATTACGGCAACTGATGCTGACTCAGGCGTTAATGCACAAATTCGCTATAGTATTGTGGAGAACGTGACAAGTAAGGTTTCAGTTGATCCAGAAACAGGATTGATATCCCAGGGAGACGTTGAGCTCGACAGAGAAATCCAACCTTATTTTAACTTTACAATCAAAGCAACCGATCAAGGAGTACCATCAAAGTCAACTCTTGCCAATGTGTCACTTGTTCTTGTGGACATCAATGATAAGAGTCCCAAATTTGCAAATGAGACTTTTTACGCAACAGTCAAGGAAAACGAACCAATAGGAACTCATGTATTCGTTGCCTACGCAACGGATGATGACACTGGTAGTAACGCAAGGCTGGAATATGGATTAGGGGGATCGTCAAGATTGATATTTAAAATCGATTCTGACAGGGGTGATATAAGTACAAACGAGCTATTGGATCGTGAGGCAGTTGAATCATATACATTGACTTTGCGTGTAGTGGACGGGGCCATACGACCAAGAGAAGGATCTGCCAATTTGATAGTAAAAGTACTTGACGTCAATGACCACTCACCTGTATTCAACCAAGAAAGATACTCATTTGCAGTCGACGAGAGTGTATCCAGCGGGCACTTGATTGGAACTGTCTCTACCACAGATAAAGATATTGATGAAAATGCACGAGTCTCTTATTCTATCACAGCTGGAAATGAAATGAATCTCTTTGCAATAAATGAAACAACAGGAAAGATAACCACGGTATCATCACTTGACAGAGAAACCAATGACACTTTTACTTTAATCATAAAGGCCCACGATCACGGATCACCACAAATGGAAAGTAATACAACGGTTACCGTCACCATCAACGATGTGAACGACAACAAGCCAGTCTTCAGTCAGCAAATGTATAATATATCACTAAAGGAAAGTGCGCAACCCGGAACAGTGGTAACAGTATCGGCAAGTGATGCTGATATCGAAGCTAATGGTCAGTTTACATTCAAGATAACGGCAGGAGATGACGACAGATTGTTCAGTATCGATGAGCAAACAGGCGTAGTAACTCTAAAAGGAAAGCTTGACCATGAAACTAAACCATTAATAAACCTGACTGTTACGGCAACGGATCGTGGGACTCCTAAACTGGAGGGTTCTGCTTTTGTTATCATAAAAGTAACTGACGTGGATGACAATGCGCCACAGTTCACGAAGGACGAATATACTGCTCAAGTTTATGAAAATATCACCAAAGGTTCATTCGTGGCTCAAGTAAATGCGACAGATATTGACGCCGATGAAGCCCACAAAACTATTCATTACAGAATAGAGGATGGCAACACAGGAGACGTGTTTGCAATTGGGGGATTGAATGGCTCTGTTTATCTCAAATGTGGTTCGTCTGTTTGCCTTGATCGAGAGACTAAGAATGGATACGTGTTGACTCTTGCTGCTATTAGTATTGTGAACGGCTCTGAACAAAAATCAACAGTCGAGCTTAAAATCACTGTGCTTGATGTCAATGACGTAACTCCAACTTTCGTGCCTCCATCCTACACGAAGAAATTGCAAGAAGATACTGGTGACATCACTGGCAAAGACAACACTATACTAACTTTAAGTGCTAGAGATACGGACCTTGGAGTGAACTCTGAGATTGTTTATTCCATAATAAAAGGAAACGAACAGGGTCACTTTTATCTGAACAACAAGACAGGCGTCTTGACCAAGCTCAAACCCCTTGATCGAGAGAATGCATCCCTTTTCCAGTTGGTTGTCGTGGCAACTGACAAAGGCATACCTCCGCTGTCCAGCAATACCAACGTTACGATAATTGTGGAAGATGTCAATGACAATCAACCTTCCTTTGAGTCGACGCCAGATAAATTTCGTGTTAAGGAGAATATCACAGCTGGCACATTCATTACTATTGTAAACGCTATAGACAAGGACGAAGGAAGCAACGCGTACATTGAGTATTTCATCATTAGTGGTAACGAAGATGGCGCATTTGCACTGAATAAAACGAGTGGCGAGTTGAAAACAGCGAAAGAACTTGACCATGAAACTACTGCTTCATATAAGCTTGTAATACAAGCAAAGAATGTGAAGAGTAACTTAAAGTTATCCAAGGAAAAAGATATCACCGTGTTAGTGACAGACCTTAATGACAACCGGCCGCTATTCTCGAAGTCTATTACGACTTTATCTGTGGGTGAGAATCTTCCCGTGGGTACCACTGTTGGTAAAATTGAAGCTAGTGACTCGGATAAATCTGACCGTGTTTACTACTATATTACTGGGAGCAGCGGTAGGGATGTCTTTGCTGTTAACGAAACAAGTGGAATCGTAACAACTAAGAAAACCATAGATCGCGAGGAGACACCATCCTTCAGCATGTTCGTCAAGGCATCAAACTACAAGtttGATTCATCATCTTCACTGAGTGCAAGGAAGAGAAGAAGCGTCAGTGAAGCAAACGTAACAAATGATCCGACAATCCAGCGCGTTGTGGTGGAAATTGCTGATGAAAACGATAACGGGCCAATATTCACCAAAGAGGTTTACTCAGGAGGAGTTCCTGAAGAGATACCTCACGGAGACAATATCATTCGTGTAATTGCTAACGATGCAGATGTTGGCAATGGTGGTCGCATTAGCTATGACTTCTCGACAAAAACTGAAGACTTAAAGAAGTTCACCATCGATAACGAGACTGGATGGATTAAGGCTGCAGATTCTTTTGCTGGTCAACGCGGCAAAGAATACGTACTTAACGTTACATCTAAGGATAACTTTGGGATAAATCCATATCATTACGACACCGCTACTGTTAAGATCTACGTACTCGTCGACTATGAACGAGCTGTTCTCATTTCTGGTAGAAGTCCTGATGAAgtcagaaaaaataaagatgaatTTATAAGGTAA

Transcript

EGACTEQ4350002766-PA

Protein

EGACTEQ4350002766-PA

MKFRRKLLPLWIYALTLIHWCYTATNHKPYIPDDTSIIIKVLEDTAVGTSIRNITAVDHEGQYITFGLDDVGKTVFDIRNFNKSVGELTLKVPLNRESVSTYDFRVTVTDGGEDRKVSKEFILNVLDVNDNKPIFVTQPYWKSIPENTTTGTELLKIEATDSDLGSNQVVTYRFSNDSNSAQDNPLVTLWKTSKFAIDNLLGTITLVAPLDYETTTRYLLPVVAEDGGNPKQESQTTVVIDVTDISDNPPKFEQSVYLKEIEENIPVGTTVLTVVARDGDAGINNPMKYEIYSGNNGTFGISSSTGVITVNSTIDAEKTQSYELHIRASEVPNPNSNATVSVLITVIDKNDNPPIFSQNTYSFSLREDLAKSNRIVTNQLIVRDADKNPNFRRFTYHVTGGDSDKFRIDPSSGEVRINSTLDYETQVNYTFTIVVTETGTDEKYSDNATFHLTLINDNDNKPIFSNSLYNYTFDEEVPPGKEIAVITATDEDLGSFGQVTYELSGSQSSFFAVDRNTGNITAARTLDYEEVHSYQFYVIASDGGGIFKETATINVALRDINDNDPVFTGTPYTSKIKENLAAGVLAVKVTVSDKDSEDNGRVSLNITSGNIDNAFAINATGFITTTKSLDREATASYTLTINASDHGIPPRNVATTVAVEVLDENDNIPYIKEGSYIVKNISESAGGGTILFDSLTGTDDDAGSNGRITYSMSGADGRFILYSDTGRLQISPTGLDREIKSSYDLVINVTDAGSPPRQNSTTIHVEVLDTNDNAPVFNPKPSEDSSAYIIEINEGPSTLNTVIIQLNATDQDEGLNKKIIYSLTGDEHGFFSLDNTTGKLTVVKELDREDAQMPKDASNNGRFFLDVTATDQAQPVSARRSATVRVTIKVKDINDNSPEFQKQSFEEHVSEAARTGSNVVQVSAVDKDLDFSGKVLYNITNGDPIGTFSISKTGYIFIAKPLDAEDVFLYNLTVLAKDEGTPPLNSTVFVFIHVDDVNDNDPKFNQSTYTASVMENCATGTSVLTVYASDKDKGSNGNVTYKISSGNQNNAFQIDVVTGVISTAASIDREAIQRYILTVQAEDQGQPSSRKDFAEVQIRVDDENDNSPQFTGSQFLANIEENSSPGTIIALTKEIHATDADIGIYGKITYSLEGLGAEHFNINASTGIITSNSSSLDREKNNTYSLDVIATDGGNRNASAKLVISVTDVNDEPPRFSQAIYYANISEDASQGSSVTMVTATDLDAGNKGSTGSIIVDSSLDREFKSSYILNITAANIVEPNFEGHAQIHITVTDVIDDKPYFSTPTMMAKMAENASVGTNVIRVTALDKDVGDSVTYVIVDGDDYEQFKIDNITGDIFTTKSLDRENTTKHTLSIQARDSKGLVSENNVKVEIDVDDVNDNSPVFTQREYIVDYREQSPKDTSILKITATDADSGVNAQIRYSIVENVTSKVSVDPETGLISQGDVELDREIQPYFNFTIKATDQGVPSKSTLANVSLVLVDINDKSPKFANETFYATVKENEPIGTHVFVAYATDDDTGSNARLEYGLGGSSRLIFKIDSDRGDISTNELLDREAVESYTLTLRVVDGAIRPREGSANLIVKVLDVNDHSPVFNQERYSFAVDESVSSGHLIGTVSTTDKDIDENARVSYSITAGNEMNLFAINETTGKITTVSSLDRETNDTFTLIIKAHDHGSPQMESNTTVTVTINDVNDNKPVFSQQMYNISLKESAQPGTVVTVSASDADIEANGQFTFKITAGDDDRLFSIDEQTGVVTLKGKLDHETKPLINLTVTATDRGTPKLEGSAFVIIKVTDVDDNAPQFTKDEYTAQVYENITKGSFVAQVNATDIDADEAHKTIHYRIEDGNTGDVFAIGGLNGSVYLKCGSSVCLDRETKNGYVLTLAAISIVNGSEQKSTVELKITVLDVNDVTPTFVPPSYTKKLQEDTGDITGKDNTILTLSARDTDLGVNSEIVYSIIKGNEQGHFYLNNKTGVLTKLKPLDRENASLFQLVVVATDKGIPPLSSNTNVTIIVEDVNDNQPSFESTPDKFRVKENITAGTFITIVNAIDKDEGSNAYIEYFIISGNEDGAFALNKTSGELKTAKELDHETTASYKLVIQAKNVKSNLKLSKEKDITVLVTDLNDNRPLFSKSITTLSVGENLPVGTTVGKIEASDSDKSDRVYYYITGSSGRDVFAVNETSGIVTTKKTIDREETPSFSMFVKASNYKFDSSSSLSARKRRSVSEANVTNDPTIQRVVVEIADENDNGPIFTKEVYSGGVPEEIPHGDNIIRVIANDADVGNGGRISYDFSTKTEDLKKFTIDNETGWIKAADSFAGQRGKEYVLNVTSKDNFGINPYHYDTATVKIYVLVDYERAVLISGRSPDEVRKNKDEFIR

Uniprot

Uniprot term	Description
Q99PF4	Cadherin-23 OS=Mus musculus OX=10090 GN=Cdh23 PE=1 SV=2
Q2PZL6	Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V0I7	Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16669	FAT4; protocadherin Fat 4	-	Cell adhesion molecules	ko04515	deepkoala