Gene detail

Detailed information of EGACTEQ4350003179-PA in Actinia equina

Genomic Location: WHPX01000087.1:2776357...2788394
NR annotation: XP_031555922.1, nuclear RNA export factor 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350003179-PA

ATGACAAATCATAGTGGCAGAGAAGGCAGCGCTTTTGGTGGAACTGATAGCTCACAATGGAATGCAGAAACAGAGCAAGCATTAAAGGAATGTTTGAGCAATCGCTACAATATGGAAACAAAGACTATGGATTTATCTGATCTATTTCATGATGAAGTTTTAAAGGCCAATAACGTACAAGGAAGTTTATATAGAGCTCCTGTGGCAAATGCAATTCTGAAACTTATTGGTGAAAATTGTCCTGATATGCAAGGTTTGGATATGAGTGATAATCGCCTGTACAATCTTGAAGCAATGAAAGACTTGTCTACTTATGCACCCAGTATACAACATCTGAAGCTATCTAACAACCAGATGAGGAATATTGAAGAACTGGATAAACTCAAAGGACTTACTGGCGTAGTTACCCTTTTTCTGAATGGGAATCCATTTTGTGATAAATTTGAAGGCAAAGAATCAACCTACATAAGTGCGGTTAGAAGCAGGTTTCCAAAAGTCTTAAATCTGGATGGTGTAGAGCATGCTCCTCCCATTGGATTTGATTTAGCTACCACCACTGCTTTACCAAAAGTCCAGGGGAGCTACCTGGTTGATCCAGAGATCAAGAAACTTCTTCTCGGTTTTCTAGAGCAATATTTCAGGATCTATGATTCAAATGACAGACAGCCCCTTCTAGAGGCATATCATGATCAGGCAATTTTTTCCATGAGTGTCAACCCAGGACCATTTAATAGAGAAAAAGGACCAAGAGGACCTTCATTGGGGGAGTACATGAAAAGCAGCAGAAATATGATCAGGAGAAAGGAGCAAGatgTTAGAGCATCTCTAATTAAACATAATCGTCTATCAGTTGTGGCCATGTTGAACGAACTACCACCAACTACCCATGAGCTTTCTTCTTTCGTTGTTGATGTCAGCTTGGCTATTcCAACTTGTCTTCATTTTTCCATTCGTGGATTTTTCATGGAAGGAAACAAGACCATGAGATCATTTACAAGAGTCTTTGTAGCACTTCCTGCAGCTGGTGGAAAGTCGTTGAAAATAGTCAATGATGAATTACATGTGAGAGGCCCTGCATTACCACAAATTCAGGCATTTAAGAAACAGCAAGAATCCATCGCAGCAACTTCAACATTACAAGTTCCTACTGCAGTACCAACTATACCAACAACTTTACCAACCATAGCAACTATACCAACCCTCACACCTTCCACGTCACTAACCACCTTACCTATCCCATCTGGACTAACACCAGAGCAACAGCAAATGATATCACAGTTTAGCAGGGAATCGAGAATGAATGCTGAATGGTCTAAAAAGTGTCTTGCTGATAATGGTTGGGATTACCAAAAGTCTGCAGAGTGCTTTACCTCATTGAATaaTCAAGGACTAATTCCTCCTGGTGCTTTTATCAAGACATAGCCTGATAGTATAGACACACTACAAGCCAGACTCCATGAAGCAAAGTGAAAAGAGATTCATGCAAGAATGGCGAACCTATCTTCAACTCTACGTTTCGTAAACTTATTCATCCAAgaattattttagttttaattatttcttttaaacccAGTTGTCCACGTTTTAtgaatcaaaaaaaattaatattatgttTGATTTGGTATTGAAAGACAAAGAATTTTAGGAAAGCTATCTAAAtctgataaaataaaaagggTTTAATGAAGCCTGAtaagtttacaaaaaaaaaatataagaaaaagaacACAGATTTGCTTGCCTTTAGAAAGCCGCATTATCTTCAAGCATTGTGGTTAGATGAGATGGACTTTGATTGGTTCTCAGTGAGGGGAGCCATCTTGCAGGCATGATCAAATCCTAGCTGCATATCGGGGCATTTGAGCACTTGGAATATAGTTTTTATGCCTTTCCCTATTCCCTTGAAGAAAAACGGGAAGAAAGACTTCAGTCAAGGCCGGATTAGTCTCTGGTATAAACGATGAGGCGCAGTTGAACACATTTGGCAATGTGAGCTACAGTTATAGCGTATGATAATCGTTAAGATGGTTTTTGAGACGTTTGCAAGTTATATCGTAATTAATATGATTATATGTAATATCTACCACAATACTCAAATAAAT

Protein

Uniprot

Uniprot term	Description
Q9UBU9	Nuclear RNA export factor 1 OS=Homo sapiens OX=9606 GN=NXF1 PE=1 SV=1
Q1RMS5	Nuclear RNA export factor 1 OS=Bos taurus OX=9913 GN=NXF1 PE=2 SV=1
Q99JX7	Nuclear RNA export factor 1 OS=Mus musculus OX=10090 GN=Nxf1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03943	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR030217	Family	Nuclear RNA export factor	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan