Detailed information of EGACTEQ4350003375-PB in Actinia equina

Genomic Location: WHPX01001286.1:155800...165043
NR annotation: XP_031558018.1, roquin-2-like isoform X1 [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P0C090Roquin-2 OS=Mus musculus OX=10090 GN=Rc3h2 PE=1 SV=1
Q9HBD1Roquin-2 OS=Homo sapiens OX=9606 GN=RC3H2 PE=1 SV=2
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-CCCH
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF14634zf-RING_5zinc-RING finger domainDomainInterproscan
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF18386ROQ_IIRoquin II domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan
IPR041523DomainRoquin IIInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15690RC3H; RING finger and CCCH-type zinc finger domain-containing protein-Ubiquitin systemko04121deepkoala

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