Gene detail

Detailed information of EGACTEQ4350004814-PA in Actinia equina

Genomic Location: WHPX01000851.1:389585...397901
NR annotation: XP_031565484.1, nucleoporin NUP42-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EGACTEQ4350004814-PA

TGAACATTTACGAAAAAACTAAACAGGTTTCTCTCAAGAAAAAGTGAGCAACAATGGTCGTGTGCCAGTTTTTCTTAAAAGGAGATTGTAAATTTGGAGACAGATGCCGAAATGAGCATCCAGGAGGAAgacCATCACAAATAAGTGTCtttggaggaggaggagggaggACTGGTGGTTTTGGAGGAGGAAGTGGATTTGGAGAAagcagtggtggtggtggtggtaactTTGGTGCAACAAATAAAAACATCTGTCAGTACTTTTTAAGAGGCACTTGTCGGTATGGCAACACTTGCAAATTTGCTCATACCAAACCAGCTGCAACAGGACAAGGAATATTTGGAAATAAAAATACACCTTTCAACAGAAATCagAATCAATTCGGTGTTCTTGGCAATGAGGTAAACATGGGAGCAGGTGTACAGCAGAGTGGTTTTGATGGTAACAAGCAACAACAATCAAGTACAGAAGCCATTCTGCAAAATCCAACGCAAATGACTCAAGTCCAACAATTTGTAAGGCGTGATATGGAAGCTTGGGAGACAAGTAAGCAGTGGCCATTATCGTGTTATACATACCTCAAGGATGAACCCTGTTTATTAGGTCTAGTGGACTTTTCGCCTGAGGAAATTAGGAAAGAAGCTTATGATGCTAAAATAGGCAACAAGGTGTCACTATATGAACAAGGACTGAAAAACTTGTTGGAAAGGAGTAGACAAAGGAGATTGGAACTGAAGAATATGAATATGCATCAACTGCAAACAGAGATCAGAGCTTCTGTATCAAAAGAATCTGTGCCTCAAGGTGCATCTAGTATGAGTCTTCAGTCAGCTGGCCAGTCATCAAACATGTCTAGTGGATCAGCGGCAATGAGCCAATCACAGGGGGTGTTTGGATCAGCTGCTAATCAGAGTAAGGGTCTGTTTGGATCTGCTTCTCTTACACAACAGCCCATGGGTACTGCTTTTGGATCATCACCAATGTCATCAAATCAAGCTAACACAGgaATGTTTGGTAGCACAGGTCAATCACAGCCTTCAAGTCTCTTTGGAGCATCCTCAGCATCTCAAAACACCAGGTTGTTTGGGACAACCAGCACAATTAACTCTGGTAATGCATTGTTTGGGGCAACTAGTAGCAACACAAGTCCATTTGGAAAACAACCCAATGCTGGAACTGTTTTATTTAATGCTGGAAACAGTCAGCCAACCATGAATGTATTTGGAAATCAATCAAGTGGTCAGACAAGCAGTACATCAGGGGTTGTGCCTTCTACTTGTCCACTGACATCCTCCAAACAAGACATTGCTGCATTTAAGGCAGATAAGTTTGTACTAGGACAGATACCAGAATGTCCCCCACCACCAGAGTTATGCACTTAGGATATCTTAAAGACCAAGTTTAACTACTTTAAAGTCCACGTTTGCCCTTACCAAGAAACAGTGGTAACCTAAAGGCCAATTTGAGTTACTTTGGTTACAgtggtaattcccttgttttgcactgcacaTTTTTCTACCCATGCAATTAAAAGCATAGAACTAACAAAGTttcaaagtttaggcatttttcttttagaaactaaataagaaacacgttcaaaaccaattttcactttttttcctttttgtgagtagagaaattgcaattgttatctgactcgccccagtctccaatcggaaaagtgtcagttttcgactattttgaaatgttttttcaagataaataaaaaacgagaatggtgacccccattttttatttcagatttgctcgtcattatatcaaaatatgaaggaaagattattggatagattttgaaatattttgatgagaatagttgaagtgcaatttttggacgttcgtacaggcgcacatacctgcatttttcactaatagttcaagaaacatagtcatccaatgactttgatggatttaatagtatagattatctagtaaacttcgagttataagtaTGTTTTgatatatgaaagtacttttaatggtgaataaaggttcttgattaaaGCTTctggttgctaccgcatttcactataaaaaccataaattgacatatttggaaaGCATCTAGCGTAAAAACAAGATTGGTGATcccatttttttttattgtagtttcttaatgtccataacataattattgtccatgcaaagtttcaggacaaagttattggcaaattttctttcaagggaattaccttaagggAAAGGGTGTTGTAGGCTTAATTTCCAgcaaagtttgaagaaaaaatttttttactgaaGATACCATGCCTAGACCTAGCCACCTATGCAGACACTATGCATCTGAGAAAAGCATTGTGTGACTGCCTTAAGGACAATATCTGCATAATAACATATAGGAGAAGGGAGACATGTCATGTGATGACTTAACTGCATGAAGACATCTCCATAGGAGAATTACTCAGACCTTGCTATAAACTTGCAACAAATTCAGCAATATATGTAAAAGGATTATGTTTTCTTTAATATGGGACCTAGTTGTCTCAGTAAAATATTAATGTAAAATGATTGCCAATGCTTGCCAATGAGTATAATGTACACTGTACAAATCCCAAACATGGATAATACTAAAGTatagtttaataaatgagcaggagtgttttatcaggtttaaaaccACGAAGCATAGCCATTTATAAAAACAAtacttcatgaataattaatcaTGAATAATTGTAGGGTCCTTATTTGTGACATGCTCTTGTACTCTTTTGGtcctttataaatatttcaaaatctttatcatAAAGAAACCCTTGTTGAGCTATTATCAGGATCCATGCACGTGGTGGATTTGAATAACCTGATAGGTCTAAatggtcattaattattaatgattttttgaaCAACGGATTAAAGTACAACTTACTATAACACCATAGAATGTTCATTATTAGTAATTTATGACAATATCTACTGATATATCATCCTGCCTTAAAATTCATGTTATTACATCTATATATAACAGATAGCCATACCATTATATTGACTAGCAGCATATTTAGAGCCATTCTTCAATGGCTTTCATCAATAATCCCTAACTCTGCCTAGTgtcatatacagtatatacTAAACATCATCAGGAACTCTAGGGGTAAAACTCTCTCACTTATTTCGGGAAACGAGAAACAAGCAAGAGCAAGAGACAaacgtaaaatcaaaattatttttaatttttttaatctaaaatatatatcaCCACCAAATGAATTCTCAGGC

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZI22	Nucleoporin NUP42 OS=Gallus gallus OX=9031 GN=NUP42 PE=2 SV=1
O15504	Nucleoporin NUP42 OS=Homo sapiens OX=9606 GN=NUP42 PE=1 SV=1
Q5RB98	Nucleoporin NUP42 OS=Pongo abelii OX=9601 GN=NUP42 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR051767	Family	Nucleoporin NUP42 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46527	NUCLEOPORIN-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14321	NUPL2, NUP42, CG1; nucleoporin-like protein 2	-	Messenger RNA biogenesis	ko03019	deepkoala